RNA id: TU707996


Basic Information

Item Value
RNA id TU707996
length 233
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G622514
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53125159 ~ 53125391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctaAGGCCCATTATCATGCAATTCATCTGCCGtcaccttatgtttcagcatgataatgcacggccccattgcacaaagatctgtacacaattcctggaagctgaaaatgttccagttctccatgacctgcatacttaccagacatgtcacccattgagcatgtttgggatgctctggatcgacatgtacaacagcattttccagttcccgccaatatccaggctgcatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707994 lncRNA downstream 1460 53123265 ~ 53123699 (-) True G622512
TU707824 lncRNA downstream 222027 52898545 ~ 52903132 (-) True G622347
TU707853 lncRNA downstream 243548 52878752 ~ 52881611 (-) True G622374
TU707845 lncRNA downstream 252428 52869067 ~ 52872731 (-) True G622366
TU707843 lncRNA downstream 263703 52861239 ~ 52861456 (-) True G622364
TU707999 lncRNA upstream 9448 53134839 ~ 53136930 (-) True G622517
TU708010 lncRNA upstream 14681 53140072 ~ 53140363 (-) True G622528
TU708016 lncRNA upstream 20025 53145416 ~ 53145784 (-) True G622534
TU708471 lncRNA upstream 25086 53150477 ~ 53243842 (-) True G622874
TU708607 lncRNA upstream 178453 53303844 ~ 53325990 (-) True G622987
NM_001160501.1 mRNA downstream 19295 53090437 ~ 53105864 (-) True pad
XM_021609659.2 mRNA downstream 283390 52785667 ~ 52841769 (-) True LOC110527983
XM_021609656.2 mRNA downstream 298622 52785667 ~ 52826537 (-) False LOC110527983
XR_005052607.1 mRNA upstream 244243 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA upstream 244243 53369634 ~ 53373429 (-) False LOC118965299
XM_021609701.2 mRNA upstream 255110 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA upstream 255110 53380501 ~ 53400793 (-) True LOC101268938
XM_021609704.2 mRNA upstream 304556 53429947 ~ 53486228 (-) True LOC110527988
TU705034 other downstream 2166619 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2819003 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3188878 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 3827911 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 3929189 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 180145 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 1947088 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 2039101 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2308065 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3565932 56691323 ~ 56696091 (-) True G627254

Expression Profile