RNA id: TU708601


Basic Information

Item Value
RNA id TU708601
length 2706
RNA type TUCP
GC content 0.38
exon number 13
gene id G622985
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53305536 ~ 53322831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgttatttttgtattgattcagtgttcagtgctttctttaattaaaattatgaacatttaccacgctgcggttcggtcctcctctctttctctagacGACATTCGTTACACATATTTACACGTGTCTCAAAGAATGAGAAAAGGCAGTTATCATGACAATTATTTGATCTCTTAAATCACACAATACACACTATCAAATATAAGTACAAAACCTCTAAGTAAATAAGATTGACGTTATTTTGTGACATTTGGGACTGCAGGAAAATAACATGAAGAGCTGGTTTCCTGTGAGCCACGATCAGTAAGCACACATTTACAAATGGTCAGTGATTATCAGCCTGGGGATTTCCTcaatcatacattttttttagtgCACTAATCTCATTACAGGGGCTTCTGCCCACACAACAGAGCAAGCTAGCAACCTGTAGTCAAATATGGCAGTTGAAAAGACAATTAcgtatatttcagttttgtatataAATAGAACATTGGGTTAAAACATTTCCGCTGAACTGACTTTCAAAAACAACTTAATAAAAGAGGAACAATCCGCTGGCACTACTTTTCAAGGCTACAGATGCAGACTAGCAGATAGGTGCAGTCCTAGCCCTGGAAAGAAATGAGACATTTTAGACAAAGCATTAACTCAGCGGAGCAGTTTTAACAATAGTGTCACTATTTAGATTACTCAAGCTCAAAAGACTAACACAAACCGTATAGTCATATGAGTGAGACTTTGGTTAAAAGATGGTGAACATATTTTTGAATAATGGTTTTAATATAATGATATGTATGAACTGTAGGTACCTTGGGTAGGCATTCAACTTAGTTATTTTGAAATTGTAATAATTCCTCTGTTCGACTTCGGTCTTCTCCAAACTGGTACGAGCTATGTATCATTTTCAAACAATGACAGTTTGTCAGGATTACCATGTTTACATATAATAGTGCAGTAAAGAAATATATTCTGCATGCCAATCTCAGTATTTTAGCAGTGTTTTAGTTGGGTAGTttgtgtgttccagtgtggtAGGCAGTTAGAAAGCTGGTCAGCTCAGCACTGTGTATAGCCTAgcctactaccccacctcccttTAGAACAACATACTCTATTCTCTTTTTCAAAGCCAATATCTGTCCGAGAGTGCCTTTGCAAAGGATTTCCTTACTACCTTGATTTTTCAACACACTGCAGGAAAAATGTAATTTTTTGGCCAAAACAGGGAAAAGTAACCAGCAAAAAGTTTGATCATGCAAATCACAGATACTGTagggaataaataaatacagtataaatGCCCATGGCCAGACTGAATGTTAGTTGATGGGTTATGTAAATAAAGTTTTGTTAACAAATATTGTTTAGGTCAATTAATTGGCCAACCGTATAGCTAGTTTATCCAAATAATTGTTTGATTTAAAGCCAGAAGCTGTGGTTAATGCACATACAGTATAGTTAGTAAGAGGAAAATATAATCTTTGATTTAGTTGTAGGTAAAATCGTGCTTAATCATGGACTATTTTCGAAAAAGATAAATTATTAAATGTAGGTTCTCACCCTTTCCTCTTCCAATACCGTGTGATCAGAACAATAAGTGTAACTTATGACAGTGCCGATCCCACTTCCCACAACTGCTGCAATCTCAGTAGCTGCATTGGTGTCATGTTCCCCAATGCCATTATTCCTCCCTGAAACTCGTATTGTGGGTGGAACAGTcgatgttgttgttattgatgatGTTGATATAGTTGTTGGTTTCAAAAGAATGTCATTGACATCTTGTATTGTGGGTGGAACAGTcgatgttgttgttattgatgatGTTGATATAGTTGTTGGTTTCAAAAGAATGTCATTGACATCTTGTATTGTGGGTGGAACAGTcgatgttgttgttattgatgatGTTGATATAGTTGTTGGTTTCAAAAGAATGTCATTGACATCTTTACATTCAGGAGGTAATGAGTTGTATTCACCATCTTCAATACACTCAATTGATTTGTTTCCAATGAGGGTGTAACCTTCATTACAGGAGTACTGTATGACACCACCATACTCTGGTAACTCTTCGCCAGGCTTCTCTATGATCGTGCCATGCATTATCTCAGGAGGTTTATCACAAGTTACCACTTTACATCTTGGTCTTCCACTCCAACCTATGGCATAACACTGCCTGTAACTTGGGCCCATAAGTTGATAaCCTTTATCACAGATTGCTCTTGCTGATGCACCAAAAAGTGTGCCTTCCTTAAACTCATATGTCAAATGTGGCATCTTCCTGGGGGCACCACAGTCCTTCTTTTTGCAGGTTAATTTGAGCGTGCTCCACTTTCCACTTGTGCAGGTGATTCTTTCAGATCCTTGCTCTTTCAAGTAGCCGTTGGCACACTCAAAAGTGGCTTCCCCTCCCTCCGGAAAATCGTTCATTAATAGCGCATCAGTCGTTAGAACAACATTTCCCTCTACTTGAGGTTTGGGACACTCGGCATTTCCACTTGTTAAAAAGATAAGGCATATCAAGCACTTAGTCCATGCCTTTGAATAAAACATTATACTGGCTGTCCTTTTTAAAGTTGATTTTATGTGAAGACAAGTCGGTCTCTCGATCTAACAAGTTCTCTCTGATCTTGTTGGCACTATCTAGCTGGCTGTTTAATCAGTACCAACCAGTCCATGGACAACTTCAACTGTCGCTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708471 lncRNA downstream 61694 53150477 ~ 53243842 (-) True G622874
TU708016 lncRNA downstream 159752 53145416 ~ 53145784 (-) True G622534
TU708010 lncRNA downstream 165173 53140072 ~ 53140363 (-) True G622528
TU707999 lncRNA downstream 168606 53134839 ~ 53136930 (-) True G622517
TU707996 lncRNA downstream 180145 53125159 ~ 53125391 (-) True G622514
TU708580 lncRNA upstream 45612 53368443 ~ 53373381 (-) True LOC118965299
TU708636 lncRNA upstream 83199 53406030 ~ 53411743 (-) True G623013
TU708641 lncRNA upstream 90099 53412930 ~ 53413188 (-) True G623018
TU708762 lncRNA upstream 267333 53590164 ~ 53591403 (-) True kif17
TU708817 lncRNA upstream 412217 53735048 ~ 53737808 (-) False G623173
NM_001160501.1 mRNA downstream 199672 53090437 ~ 53105864 (-) True pad
XM_021609659.2 mRNA downstream 463767 52785667 ~ 52841769 (-) True LOC110527983
XM_021609654.2 mRNA downstream 478999 52785667 ~ 52826537 (-) False LOC110527983
XM_021609656.2 mRNA downstream 478999 52785667 ~ 52826537 (-) False LOC110527983
XM_021609657.2 mRNA downstream 478999 52785667 ~ 52826537 (-) False LOC110527983
XR_005052607.1 mRNA upstream 46803 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA upstream 46803 53369634 ~ 53373429 (-) False LOC118965299
XM_021609701.2 mRNA upstream 57670 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA upstream 57670 53380501 ~ 53400793 (-) True LOC101268938
XM_021609704.2 mRNA upstream 107116 53429947 ~ 53486228 (-) True LOC110527988
TU705034 other downstream 2346996 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2999380 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3369255 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4008288 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 4109566 49195604 ~ 49195970 (-) True G617632
TU711185 other upstream 1749648 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1841661 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2110625 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3368492 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3511754 56834585 ~ 56835092 (-) True G627314

Expression Profile