RNA id: TU708611


Basic Information

Item Value
RNA id TU708611
length 503
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G622991
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53317862 ~ 53319706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTACATTCAGGAGGTAATGAGTTGTATTCACCATCTTCAATGCACTCAATTGATTTGTTTCCAATGAGGGTGTAACCTTCATTACAGGAGTACTGTATGACACCACCATACTCTGGTAACTCTTCGCCAGGCTTCTCTATGATCGTGCCATGCATTATCTCAGGAGGTTTATCACAAGTTACCACTTTACATCTTGGTCTTCCACTCCAACCTATGGCATAACACTGCCTGTAACTTGGGCCCATAAGTTGATAaCCTTTATCACAGATTGCTCTTGCTGATGCACCAAAAAGTGTGCCTTCCTTAAACTCATATGTCAAATGTGGCATCTTCCTGGGGGCACCACAGTCCTTCTTTTTGCAGGTTAATTTGAGCGTGCTCCACTTTCCACTTGTGCAGGTGATTCTTTCAGATCCTTGCTCTTTCAAGTAGCCGTTGGCACACTCAAAAGTGGCTTCCCCTCCCTCCGGAAAATCGTTCATTAATAGCGCATCAGTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708471 lncRNA downstream 74020 53150477 ~ 53243842 (-) True G622874
TU708016 lncRNA downstream 172078 53145416 ~ 53145784 (-) True G622534
TU708010 lncRNA downstream 177499 53140072 ~ 53140363 (-) True G622528
TU707999 lncRNA downstream 180932 53134839 ~ 53136930 (-) True G622517
TU707996 lncRNA downstream 192471 53125159 ~ 53125391 (-) True G622514
TU708580 lncRNA upstream 48737 53368443 ~ 53373381 (-) True LOC118965299
TU708636 lncRNA upstream 86324 53406030 ~ 53411743 (-) True G623013
TU708641 lncRNA upstream 93224 53412930 ~ 53413188 (-) True G623018
TU708762 lncRNA upstream 270458 53590164 ~ 53591403 (-) True kif17
TU708817 lncRNA upstream 415342 53735048 ~ 53737808 (-) False G623173
NM_001160501.1 mRNA downstream 211998 53090437 ~ 53105864 (-) True pad
XM_021609659.2 mRNA downstream 476093 52785667 ~ 52841769 (-) True LOC110527983
XM_021609656.2 mRNA downstream 491325 52785667 ~ 52826537 (-) False LOC110527983
XR_005052607.1 mRNA upstream 49928 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA upstream 49928 53369634 ~ 53373429 (-) False LOC118965299
XM_021609701.2 mRNA upstream 60795 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA upstream 60795 53380501 ~ 53400793 (-) True LOC101268938
XM_021609704.2 mRNA upstream 110241 53429947 ~ 53486228 (-) True LOC110527988
TU705034 other downstream 2359322 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3011706 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3381581 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4020614 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 4121892 49195604 ~ 49195970 (-) True G617632
TU711185 other upstream 1752773 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1844786 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2113750 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3371617 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3514879 56834585 ~ 56835092 (-) True G627314

Expression Profile