RNA id: TU708273


Basic Information

Item Value
RNA id TU708273
length 2731
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G622706
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53524367 ~ 53527401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAAAGACAGTGAGACTGACATTAGGCACTGCAGAAAAAGGATTCATCTGGATTACTTCATTTTATTTATCTTTCAATGCAAATTTACAGAAAACTCTCAGACACATCTTGACTTTTTTTTGTCTTCAATGATTACTCTTAAATCAGTCCTCAAATATTTGTAACAATCTTTTGATGAAACTTGCTCATAGTGTTTGATGACtgttgtttgatgttttgtatttgtatttgtattgtgttttgtttTTAGGAATGGATCAAACAAGAACCAAGAGTTGAAAAGTCAATCTCCAGTAAGGGCTAAGGCATTCACCTGGGCCTGGAACACACTGGAggaatggaacagaacaggagCAGGTCTCATCTTGTGCAGGGAGAGGCTGGCACACCCTTTACACACGCACAATTAACAGATACTTGGAGTCAACTGGCTCTTGCACCCTCTATAAGTTCCAAGGAGTACTCAGCTATGAATTGGGGCAAAGGAAAGGACTCATAGGCTGACTGGAATTAGCCATGCATTCTATCCTTCATTCCACCGGAGTCTGTGTCATGAACCATTCAGATTTCAGTGGTGTGAAGAGTAAGAAACATGGACTTTATCGTCAATAGAAAAGATTGGAGAATTGAATTCTCTACTCTGTGACTATGGACTCAAATCAGTAACTGAATTTAGTATTGTTTCCAGCATTGTActgcagacatactgtatattaaaaaACATTAGgagtattttttttatacatagaTCAATAAAGAATCAAAGCCTGACGGAGCGGTGCAAACATGAATAAAGTGTTACTACCTGCATTAGATTTcatttatatttctgtttatGGTTTGGTGTATGACACAGTTGCAATCTCTACAAGAACATGGTGGGTCAGATTCTTGGTCATTAATATTTGCAACTCATGACCATTTCTGTGACCTATGACCTACCAGGTCATAGGTcagttcaggttcatcaaagctgggcctgagagactgaaaaacagcttctatctcaaagcgatcagactgttaaatagccatcactagccggcttccacctggttacgcaaccctgcaccttagaggctgctgccctatgtacatagacttggaattactggccactttaacagtggaacactagtcactttaataatgttacatactgctttactcatctcatatgtatatactgtagtctattctactgtattttagtcaatgccactctgacattgctcaatctaatatttacaTATTTCTTTATTCCTTTCTTTTACTtctagatgtgtgtattgttgtgaattgttagatactactgcactgttggagctaggaacacaagcatatcactacacccacaataacatctgctaaatatgtgtatatgaccaatacaatttcattttatttgatttttgatttgccATGCAGTACCTCCACTGATGTAATGCATCTAAAAAACAAGTTGCATCTAAAATGAAAATATATGTGGCCAGGCACATAATACAAAGCCCTTTAAGAATACTACAAATGTTTGTTGTATTTGCCATATAAAACTAATCACTCACTCTTTGTACATAAATGAGGTTGTGAAATCACAAGTTGTCATTCAGACACTCTTAACCCCACCCCTCCAGGTCCCTTTTACTCAGCCCTGGATTTTCCTGAAGTAGAATACAACTACATGCAAATGGGAATATCACCCATAGTGAATAACTTTATCAAGGGCATATCTTTCCTCATGCAACTTCTTCTAACTTGATATGGCTTCATCTAAGTAGATACAAATGTCTACATGTATAATATCAACCAATCAGATACTTTTATCTTAGCCTTTAGTCTTTAGTATTTGGCCTTAATTGAAAACCATCCCTCTCTCACATTTCCATCAGATATTTCTATTCAGAGATTGAATGTATCATTCTTGTTCTAAAGATAGCTGGCTTTCCCATGAGACCATACCTGGGTCTCTGTGGGGCAATTAACTATCTTCATTAGCAATGAGACATTTTGCAGACCCTATTCAAAGTGTTAATTGCTTCGAAAGAGACTGCTGGAAGTCACTTGACAGCTATTGTCTGCTTTAGTCATCCAGTTATAATTCTTCCACCCAATTAAGATGAAGGAGCATAATGaatgaacaaacaaaacaataacaggaCAAATCTGGAATGATTAATATCCTGGTAATTTCACTAATTGGATCGTGTGACAAAAAAGGCTCAAACTCCGCTTCGATgcatctttttttattttctacGCACGTTCATTTCTAGCAACATATTGGTTTCATGACCTTCCAGTTCTGTAATTCCAAGCATGCCATCAACTTTGGGACATAAGTCAAAACAGCTCAAACAATAATGTTATATGCTGAAAAATATTAACCAGGATAAAAATCTAATTTAAAAACTAGAGTACATGAGTTCAAGATACTTTTGCCACACATTTCACATTGTACAATGTTAGCTCTATATGTTTTATGATCCATATTCTAATAGCAACATAATTCATTAATAATCAACATTCCTCATCTTTGTAACCATATCTGACCACAATAATGTCCCTCACTCACACAGTAGATAGTGTAGTGGCGCTGTCCTGAACAGGCCTCTCCTGCACCACACACCTCAGCCTGCTGTTCATCTTCCTGTTGGTGGTTATGATCAGCAGGGGGCTGAGTTCTGCATACAGCGACAAGAATAATATGTGCACAGTCCATTATCCACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708231 lncRNA upstream 109569 53414510 ~ 53414798 (+) True G622669
TU708223 lncRNA upstream 112620 53405834 ~ 53411747 (+) True G622662
TU708197 lncRNA upstream 120421 53357391 ~ 53403946 (+) True G622641
TU708020 lncRNA upstream 375852 53148309 ~ 53148515 (+) True G622538
TU707786 lncRNA upstream 384601 53139553 ~ 53139766 (+) True G622316
TU708352 lncRNA downstream 61588 53588989 ~ 53637160 (+) True LOC110527993
TU708386 lncRNA downstream 97040 53624441 ~ 53625752 (+) True G622799
TU708418 lncRNA downstream 153672 53681073 ~ 53743473 (+) True G622831
TU708828 lncRNA downstream 228374 53755775 ~ 53756172 (+) True G623183
TU708836 lncRNA downstream 234121 53761522 ~ 53761727 (+) True G623191
XM_036983516.1 mRNA upstream 189853 53305522 ~ 53334514 (+) False LOC110527987
XM_021609709.2 mRNA downstream 2832 53530233 ~ 53546191 (+) False LOC110527990
XM_021609710.2 mRNA downstream 2832 53530233 ~ 53546191 (+) True LOC110527990
XM_036983526.1 mRNA downstream 24907 53552308 ~ 53563191 (+) False LOC110527992
XM_036983525.1 mRNA downstream 24908 53552309 ~ 53563191 (+) False LOC110527992
XM_021609718.2 mRNA downstream 24909 53552310 ~ 53563191 (+) False LOC110527992
TU707108 other upstream 1031127 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 1132734 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 2450360 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 3220135 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3904199 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 226505 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1296236 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 1519895 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 1519895 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 1543231 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile