RNA id: TU708821


Basic Information

Item Value
RNA id TU708821
length 737
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G623176
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53741354 ~ 53748563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaacagtacagagtcaaagtggagactatatacaggggggtaccagtacagagtcaatgtgcggggacaccggttagtcaaggtaattgaggtagaatgtacatgtaggtagagctaTTAAAGTCACTATGCATAGAATCATACCCAGATGACTGATACAGTGTGTCTACAAACAATCCATGGTTGTAAAATCATTCATTACTCACCAAAAATGGTGTTCCCTCTTGGTGTGTAGCCGCCGAAGTTGAACATGTGAGAGTGGTCAGCAGTGACGACAGTCATTGTGTCATAGATGCTGGTTATGAGGCCGGCACGGCCGATGGCCCGGTCCATCTCCACTGCCTCATGTAGGGCCTGCTTGGCTTTGCCCTCATGATGTCCGTGGTCGATGCGCCCCCCCTCCACCAGCAGGTAGAATCCCCTGGGGTTTTTCCTCAGGATCTTGATGGCCACctccaccatctctgtcagggaAGGATCTGTCTCAGTGTTTCTCTCCAGGTTGTAGGGCAGATCTCCCGGCTCAAACAGACCCAAAATGTAATCCACATTATTAGGATTTACTGATAGAAGTTCTCTCTTGTTCCATACATACTGGGCTTTCTTGTTTTTCATTCTGTTAGTCCACTCCTCCACCAAGTTCCTTCCATCTTTGCGGGTACCAAAATGTTTCTTATCTCCAGGATACTCCACATCTGACTGGTTTTTGGGGAACATgtacttcctccctcctcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708817 lncRNA downstream 3546 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA downstream 3546 53736264 ~ 53737808 (-) True G623173
TU708762 lncRNA downstream 149951 53590164 ~ 53591403 (-) True kif17
TU708641 lncRNA downstream 328166 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 329611 53406030 ~ 53411743 (-) True G623013
TU708822 lncRNA upstream 2346 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 3108 53751671 ~ 53751956 (-) True G623178
TU708824 lncRNA upstream 3694 53752257 ~ 53752465 (-) True G623179
TU708837 lncRNA upstream 12748 53761311 ~ 53761586 (-) True G623192
TU708843 lncRNA upstream 16783 53765346 ~ 53765632 (-) True G623198
XM_021609749.2 mRNA downstream 8566 53704724 ~ 53732788 (-) True LOC110527997
XM_021609748.2 mRNA downstream 21904 53704724 ~ 53719450 (-) False LOC110527997
XM_036983534.1 mRNA downstream 21904 53704724 ~ 53719450 (-) False LOC110527997
XM_036983532.1 mRNA downstream 37397 53636783 ~ 53703957 (-) False LOC110527996
XM_021609754.2 mRNA upstream 17503 53766066 ~ 53771880 (-) True LOC110527999
XM_021608275.2 mRNA upstream 25792 53774355 ~ 53775511 (-) True LOC110527121
XM_036984488.1 mRNA upstream 71897 53820460 ~ 53835329 (-) True LOC110527124
XM_021609763.2 mRNA upstream 417988 54166551 ~ 54180404 (-) True LOC110528002
XM_036983545.1 mRNA upstream 446152 54194715 ~ 54198212 (-) False LOC110528966
TU708601 other downstream 418523 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2782814 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3435198 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3805073 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4444106 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1323916 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1415929 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1684893 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2942760 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3086022 56834585 ~ 56835092 (-) True G627314

Expression Profile