RNA id: TU708837


Basic Information

Item Value
RNA id TU708837
length 276
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G623192
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53761311 ~ 53761586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacaacaattccatgtgaatccgataactacaatgtgcagactttccactgtatagtttatgtcatcctatcattgatgagaatgtctcagatgacaaccaaactggcataatattcattaagtaccaccgcttATGTTcgcagaatctctatgttaaccaagggattttcaaatgtcacatcagtagggtagagagaggaaaaaggggggagaggtatttatgactgtcataaacctacccccaggccaacgtcatgacaggagCAACCAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708824 lncRNA downstream 8846 53752257 ~ 53752465 (-) True G623179
TU708823 lncRNA downstream 9355 53751671 ~ 53751956 (-) True G623178
TU708822 lncRNA downstream 10125 53750909 ~ 53751186 (-) True G623177
TU708821 lncRNA downstream 12748 53741354 ~ 53748563 (-) True G623176
TU708817 lncRNA downstream 23503 53735048 ~ 53737808 (-) False G623173
TU708843 lncRNA upstream 3760 53765346 ~ 53765632 (-) True G623198
TU708887 lncRNA upstream 40321 53801907 ~ 53802189 (-) True G623240
TU709149 lncRNA upstream 160436 53922022 ~ 53922229 (-) True G623496
TU709150 lncRNA upstream 160754 53922340 ~ 53922590 (-) True G623497
TU709169 lncRNA upstream 193667 53955253 ~ 53955463 (-) True G623515
XM_021609749.2 mRNA downstream 28523 53704724 ~ 53732788 (-) True LOC110527997
XM_021609748.2 mRNA downstream 41861 53704724 ~ 53719450 (-) False LOC110527997
XM_036983534.1 mRNA downstream 41861 53704724 ~ 53719450 (-) False LOC110527997
XM_036983532.1 mRNA downstream 57354 53636783 ~ 53703957 (-) False LOC110527996
XM_021609754.2 mRNA upstream 4480 53766066 ~ 53771880 (-) True LOC110527999
XM_021608275.2 mRNA upstream 12769 53774355 ~ 53775511 (-) True LOC110527121
XM_036984488.1 mRNA upstream 58874 53820460 ~ 53835329 (-) True LOC110527124
XM_021609763.2 mRNA upstream 404965 54166551 ~ 54180404 (-) True LOC110528002
XM_036983545.1 mRNA upstream 433129 54194715 ~ 54198212 (-) False LOC110528966
TU708601 other downstream 438480 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2802771 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3455155 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3825030 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4464063 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1310893 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1402906 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1671870 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2929737 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3072999 56834585 ~ 56835092 (-) True G627314

Expression Profile