RNA id: TU710015


Basic Information

Item Value
RNA id TU710015
length 237
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G624326
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54581581 ~ 54581817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtttgtccttgatgtgtacgccgaggaacttaactttccaccctctccactactgtcccgtcgatgtggatagggggtgctccctctgctgtttcctgaagtccacgatcatctcctttgttttgttgacattgagtgtgaggttattttcctgacaccacactctgaggtccctcacctcctccctgtaggccgtcttgtcgttgttggtgatcaagtcTACCATTGTAGTGTcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU709964 lncRNA downstream 18190 54521930 ~ 54563391 (-) True G624276
TU709877 lncRNA downstream 79721 54501622 ~ 54501860 (-) True G624191
TU709737 lncRNA downstream 248670 54332549 ~ 54332911 (-) True G624055
TU709703 lncRNA downstream 317487 54262680 ~ 54264094 (-) True G624025
TU709438 lncRNA downstream 383480 54197884 ~ 54198101 (-) True LOC110528966
TU710219 lncRNA upstream 133564 54715381 ~ 54715671 (-) True G624523
TU710483 lncRNA upstream 234862 54816679 ~ 54816976 (-) True G624783
TU710488 lncRNA upstream 242667 54824484 ~ 54824904 (-) True G624788
TU710492 lncRNA upstream 247925 54829742 ~ 54830051 (-) True G624792
TU710496 lncRNA upstream 250383 54832200 ~ 54832429 (-) True G624796
XM_021609765.2 mRNA downstream 96368 54202674 ~ 54485213 (-) True LOC110528004
XM_021609767.2 mRNA downstream 96370 54202674 ~ 54485211 (-) False LOC110528004
XM_036983545.1 mRNA downstream 383369 54194715 ~ 54198212 (-) False LOC110528966
XM_021609763.2 mRNA downstream 401177 54166551 ~ 54180404 (-) True LOC110528002
XM_036984488.1 mRNA downstream 746252 53820460 ~ 53835329 (-) True LOC110527124
XM_036983546.1 mRNA upstream 225832 54807649 ~ 54961056 (-) True LOC110528967
XM_021609769.2 mRNA upstream 416624 54998441 ~ 55036497 (-) False LOC110528005
XM_021609771.2 mRNA upstream 416624 54998441 ~ 55036497 (-) False LOC110528005
XM_021609773.2 mRNA upstream 416624 54998441 ~ 55036497 (-) False LOC110528005
XM_021609768.2 mRNA upstream 416624 54998441 ~ 55036498 (-) False LOC110528005
TU708601 other downstream 1258750 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 3623041 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4275425 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 4645300 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 5284333 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 490662 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 582675 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 851639 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2109506 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 2252768 56834585 ~ 56835092 (-) True G627314

Expression Profile