RNA id: TU710478


Basic Information

Item Value
RNA id TU710478
length 247
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G624778
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54974192 ~ 54974438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaaggggaggaggaagatgaagagcAAGGGGAGAAGTTTGGGTTTGTCGACAGTGCTGATGAAGAGAAAGAGCCAGCGGATTGTAAAGACCCTGTCTCAGACTTTGTAAAAGCCAGTCAAAAATCAAACCAGTCATTTAAGGAGGCTACAAACCCACCACAGGACAACACACTAACACCCACTGCACACTCACAACAGCACCTCAATGCAATGCCCCCTGCTGGTCAGGAGGACGCTCCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU710598 lncRNA downstream 2210 54971726 ~ 54971982 (-) True G624892
TU710595 lncRNA downstream 5321 54968666 ~ 54968871 (-) True G624889
TU710588 lncRNA downstream 19353 54954550 ~ 54954839 (-) True G624882
TU710585 lncRNA downstream 25728 54948243 ~ 54948464 (-) True G624879
TU710584 lncRNA downstream 26476 54947481 ~ 54947716 (-) True G624878
TU711168 lncRNA upstream 68017 55042455 ~ 55042874 (-) True G625410
TU711162 lncRNA upstream 69751 55044189 ~ 55046091 (-) True G625404
TU711163 lncRNA upstream 105452 55079890 ~ 55101117 (-) True LOC110528008
TU711172 lncRNA upstream 123305 55097743 ~ 55098277 (-) True G625414
TU711235 lncRNA upstream 186567 55161005 ~ 55162187 (-) False LOC110528015
XM_036983546.1 mRNA downstream 13136 54807649 ~ 54961056 (-) True LOC110528967
XM_021609765.2 mRNA downstream 488979 54202674 ~ 54485213 (-) True LOC110528004
XM_021609767.2 mRNA downstream 488981 54202674 ~ 54485211 (-) False LOC110528004
XM_036983545.1 mRNA downstream 775980 54194715 ~ 54198212 (-) False LOC110528966
XM_021609763.2 mRNA downstream 793788 54166551 ~ 54180404 (-) True LOC110528002
XM_021609769.2 mRNA upstream 24003 54998441 ~ 55036497 (-) False LOC110528005
XM_021609771.2 mRNA upstream 24003 54998441 ~ 55036497 (-) False LOC110528005
XM_021609773.2 mRNA upstream 24003 54998441 ~ 55036497 (-) False LOC110528005
XM_021609768.2 mRNA upstream 24003 54998441 ~ 55036498 (-) False LOC110528005
XM_021609770.2 mRNA upstream 24003 54998441 ~ 55036498 (-) True LOC110528005
TU708601 other downstream 1651361 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4015652 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4668036 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5037911 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 5676944 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 98041 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 190054 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 459018 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1716885 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1860147 56834585 ~ 56835092 (-) True G627314

Expression Profile