RNA id: TU711162


Basic Information

Item Value
RNA id TU711162
length 1903
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G625404
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55044189 ~ 55046091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACATTTTTACTCCTCAGTAATACTTATTCACTCGTGACATTTCAgcgttttattttttattaatttgttaacattttgaaaaacaattccactgacattatggggtattgtgtgaaaaaatatatttaatacaatTTTAAATTTGGGCTGTAAGACAAccaaatatggaaaaagtcaaggggcatgaatactttctgaaggcactgtaaatgcaaaAAGTGATATTGTGTCTTataaggtcctaaacgatataaccgccatcgataaaagagtactgtgcagccgtctacatcgacctggccaaggcttcttatcggtagactcaatagccttggtttatcaaatgactgcctcgtctggttctccaactacttctcagatagagtttagtgtgtcaaatcggagagcctgttgtccggacctctggcagagTCTAttggtgtgccacagggttcaattctcaggccgactcttttctctgcatatatcaatgatgtcgctcttgctgctggtgattctctgatccacctctacgcagatgacaccattctgtatacttctggcccctctttggacactgtgttaactaaactccagacgagtttcaatgccatgtaacactccttccgtggcctccaactgctcttaaattcttgtaaaactaaatgcatattCATTAACCGCTCGCTGCCTgcacctagcatcactactctgggcggttctgacttagaatatgtggactacaaatacctaggtgtctggttagaccgtaaactctcattccagactcacattaaacatctccaatccaaaattaaatctagaatcggcttcctatttcgcaacaaagcctccttcacatactgctaaacataccctcgtaaaactgactctcctaccgatccttgacttcggcgatgtcatttacaaaatagcctccaacactctgcgacctgtatgctctcgttggttggccctcgcttcatattcgttgccaaacccactggctccaggtcatctataagtctttgctatttaaagccccgccttatctcagctcactggtcaccattgcaacacccacccgtaccacacgctccagcaggtatatttcactgctcatcaccaaagccaactcctctggcctcctttcctttcagttctctgctgccaatgactggaacgaattgcaaaaatcactgaagctggagactgatatctccctcactaaatttaatcatcagctgtcagagctgcttaccgatcattgcacctgtacactgcccatctgtaaatagcccacccacccaactacctcatccccatattgttatttattttttgctattttgcaccccagtatctctacttgcacatcatcatttgcacatctatcactccagtgttaatgctaaattgtaattattttgccactatggcctatttattgccttacctccctaatcttactacatttgcacacaccgtatatagatctttctattgtgttatttactGAACGTTTCTTTAtcccatgtgtaagtctgtgttgtttttgtcatactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaacaggcctacctggttaaataaaaaattataaaataatAGCACAGAGCTTTCCAAGAAAACAATTTAgacatttatggtctgtttacatattttttagaggctatttatacaGAACATGTGTATAAAACCGgtataaactgtatttataattatatgaaaatattttaggttgacaatTGTGTTACACAATTTCTGATACACCTTCCTTTTACATAATCCAGAAAAATCTGGATTATGCCTCTGCCcttcattccaattagactggtttggatttctccctggcT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711168 lncRNA downstream 1315 55042455 ~ 55042874 (-) True G625410
TU710478 lncRNA downstream 69751 54974192 ~ 54974438 (-) True G624778
TU710598 lncRNA downstream 72207 54971726 ~ 54971982 (-) True G624892
TU710595 lncRNA downstream 75318 54968666 ~ 54968871 (-) True G624889
TU710588 lncRNA downstream 89350 54954550 ~ 54954839 (-) True G624882
TU711163 lncRNA upstream 33799 55079890 ~ 55101117 (-) True LOC110528008
TU711172 lncRNA upstream 51652 55097743 ~ 55098277 (-) True G625414
TU711235 lncRNA upstream 114914 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA upstream 115459 55161550 ~ 55162187 (-) True LOC110528015
TU711271 lncRNA upstream 124303 55170394 ~ 55170660 (-) True G625477
XM_021609768.2 mRNA downstream 7691 54998441 ~ 55036498 (-) False LOC110528005
XM_021609770.2 mRNA downstream 7691 54998441 ~ 55036498 (-) True LOC110528005
XM_021609769.2 mRNA downstream 7692 54998441 ~ 55036497 (-) False LOC110528005
XM_021609774.2 mRNA upstream 1202 55047293 ~ 55052787 (-) True LOC110528006
LOC110528008 mRNA upstream 33893 55079984 ~ 55101228 (-) False LOC110528008
XM_021609782.2 mRNA upstream 60658 55106749 ~ 55132386 (-) False LOC110528010
XM_021609783.2 mRNA upstream 60658 55106749 ~ 55132386 (-) False LOC110528010
XM_021609786.2 mRNA upstream 60658 55106749 ~ 55132386 (-) False LOC110528010
TU708601 other downstream 1721358 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4085649 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4738033 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5107908 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 5746941 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 26388 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 118401 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 387365 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1645232 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1788494 56834585 ~ 56835092 (-) True G627314

Expression Profile