RNA id: TU711245


Basic Information

Item Value
RNA id TU711245
length 1123
RNA type TUCP
GC content 0.39
exon number 2
gene id G625472
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55164492 ~ 55188756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTTCGATGATTGTTTTTATTCGCATCAACTTGATTTGAAGATTTACATTcattttgaaaacatgttttcaagcTTGACAATAACTTCTCGGAATGCGAGTGATACTGATAAACTCACATAGTGACACAAACCATTACTTACATATGTTTAAGCTCCTCTCACAATCGAGAGGAAGTAACTTATTCTGACTTAAATGCAGATATCATTTTTTTGAATTATGACATACGATGCTGTTTGCATGTTTTAATATCAATATCAAAACAGGGCAAATAAGAATTACATTTTTTCACTAGTTTTTCCACTAGGAAGACAGTGAACACCATAtcataaattattatttttccacaggaaaaaatacaaaatatattcactttataaaAATGAAATAGAATCTTATTCGTGAAACGAAAATAAAAACAGAAGATTCAATTGATGCTCTTGTAATCAAGAGAGGATCATTTAAATACTGACATTGTTAAATGTCCTTTTCATTAAAACTAAAACTTATAGTATAAACTCCTGCAAATGCAGAAAATGAGGATGAAATCGTCAGTAATGTGGAGTAGGAAATGTCCTGCTTGAGCATATGAGGAAGAAGATCTCTTCCTATTCTCATTACTGTCTAACATCCATAACATTATTCTTAGACCAACATGGTCCATTGTGCTTGTCTGAGAGTGGAGCTCCAGTCTGTAGGACTCTACCAGGGCCTCCAGAGGGCGCTGTTAACTGGACCCTTCTCTTTGCTGTGCTGGGCTGGAGAGCTCAGCTGAGGCAGGTCACTCTCCCTTCTGTTCTTATCAGAGGATGGCTGAAGTATCTTGAAGTGGCTCAGCAGTCTTCTCTGGAATGTGTCTTCACCTCATCCTTGGACAGGAAGTGCACAATCTCTTGGACACTCCTGGAGTAAGCCTGATTGACAGGAGCTTAACATGAGGAGTAGTTCACTGGCTGGTACTGTTGTTGTCGTATCAGGAAGAAAACTGTCAGCTCCAGGATGCCTGCTTTCTCCATCTTGGAGTCAGACTGATGGTTGAGGATCTCTGGACCCAGGAGAGACTTGAGCTGCTCAAGGCTGTTGTTGATGTCGATGTCTGAATAACTTCTCCACCACTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711235 lncRNA downstream 2305 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA downstream 2305 55161550 ~ 55162187 (-) True LOC110528015
TU711163 lncRNA downstream 63375 55079890 ~ 55101117 (-) True LOC110528008
TU711172 lncRNA downstream 66215 55097743 ~ 55098277 (-) True G625414
TU711162 lncRNA downstream 118401 55044189 ~ 55046091 (-) True G625404
TU711159 lncRNA upstream 56400 55228600 ~ 55231756 (-) True LOC110528018
TU711336 lncRNA upstream 141304 55313504 ~ 55314949 (-) True G625531
TU711365 lncRNA upstream 187624 55359824 ~ 55360081 (-) True G625560
TU711373 lncRNA upstream 196440 55368640 ~ 55368849 (-) True G625568
TU711375 lncRNA upstream 197145 55369345 ~ 55369642 (-) True G625570
XR_002474180.2 mRNA downstream 2246 55160922 ~ 55162246 (-) False LOC110528015
XM_021609780.2 mRNA downstream 6334 55132795 ~ 55158158 (-) True LOC110528009
XM_021609781.2 mRNA downstream 6337 55132795 ~ 55158155 (-) False LOC110528009
XM_036983548.1 mRNA downstream 7804 55132795 ~ 55156688 (-) False LOC110528009
XM_021609782.2 mRNA downstream 32106 55106749 ~ 55132386 (-) False LOC110528010
XM_021611133.1 mRNA upstream 23654 55195854 ~ 55196454 (-) True LOC110528968
XM_021609790.2 mRNA upstream 29939 55202139 ~ 55204250 (-) True LOC110528016
XM_021609791.2 mRNA upstream 37382 55209582 ~ 55225927 (-) True LOC110528017
XM_021609794.2 mRNA upstream 57521 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA upstream 57521 55229721 ~ 55309125 (-) False LOC110528018
TU711185 other downstream 89096 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1841661 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4205952 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4858336 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5228211 49660035 ~ 49936281 (-) False LOC110527961
TU711411 other upstream 261256 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1519123 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1662385 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1674762 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1681367 56853567 ~ 56869375 (-) False vamp3

Expression Profile