RNA id: TU710771


Basic Information

Item Value
RNA id TU710771
length 2180
RNA type TUCP
GC content 0.42
exon number 2
gene id G625038
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55211705 ~ 55213911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTGAAATtgttttcaaaacaataaagatggcaTGAAATTCAGATTGAGACTGAGCAATCACATGAAGTTGAAGCAATTAGCACTTACATATATTTTTTGCAAACGCTCAGTAAAATATTCCACAATTGGAAAAGAAGGGTTAGAACAGTAAGTGTGCGCAGTTGCTGAGGTAAACATGATTAGATGGCAAAGTGGGGTTTAAGTAAAAAGGTAACAGCACCCTCATGCTCAACcgggtctcagagcattttgtaatATCCTTAACGGAAATCCAAGACACTCCAGTTagtatgttacgtttcgtatggtatgtattaatttgtggttGTCCATCACATTacgttacgaatttgcaaaacgtacaatatgttacaaattctagctaggtggctaatgttagctaggataggggttagggttaagtttaggagttctgttaaagggttagctaaaaagGGTTAAGGGTTACGTAACATGCTAGTAGTTGCAAAAGTTCAAAAAAgttgtaagtagttgaaaagtaaAATGCGAAAGTTGtttgtgatgagattcgaactcgcaacctttggaTTTCTAGACATTTACGTTATAtgcctgaccaaccaccctacttttggTATTTTCCTcacgtaaccataccaaacataaaatatcatactaatttgagtgtcccagatttacTTTTagtatgttacgtctagtctatgagaccaggctgtcatGCGCAGTCtcaatgtctctctttctctcccccctcccagaggaccatgcctcaggactacctggcatgacgactcctggctgtcccgGTCCaactggtcgtgctgctgctccagtttctgcTGTTTGCATGCGGCAGTGGAACCctaacctgttcaccggacgtgctaccctGTCCAGGACATGCTGTTTTCGACCCTCTCGTTTGAACATATTCAAGAACGATCTGgccatgtactattataaatcTCCACCCAGAACAGCCAGAAGAGTGGCCACcccccagagcctggttcctctctaggtttcttcctagggagtttttcctagctactGGGTccctgtataagcactttgtgagaTAGGCtgagggctttataaatacatgtgatcATAGCCACATCCTGTAGGACCAGCCATAGCTCAAGTGTAACAAGTCAAGTACATCACCTTTCCTATCAGAGACAGTCAGGAGGTTGAGTATTAGTGTGACAATACAGCAAATCAATCATAACACAGCGAGGAACTGAGTTTAGGTTAAGGACTGTTAGTAAGGACTTTCTTAGCACCAAAAAAGGAAGATAACCATTCTTCCCTCTTTTTGCCATCACAAAcacttaaaattataaacattttgaTACTTGAACTTTAGCTGTCATGAAATATTCATGGTCAAAACTCAGtgttattgtttttgtcaaaGGGTGTTAAGATGATAGACGGTCAGTTAATTTTTCTAATACAGAGTCAGTTTcgtatgaagaaaaaaaacatcttcCACTCATAAAGTATTTGATGCTTAACAACTCTTTGAATACTTTCCTCAGGACAGAACAGGCGGAGACAACCTAACAGTGAGTAGCCTACATCTCAGGACCAGTCAGTACTGGTAAAACAGAGGCTCAGAAGCACATAGCAgccatttgattaaaaaaaaacagatgatTGATTATTACAAGTCTGTGGAATCCATGGTAGACCACACAGTTTTACTATGTCTGTGGATCCACGGGACGTATTGTCACATTGTCATTCTTCTGTGCAGCTAGCAGGCAGCTTGGCTGGGTCAGCTGCAGCTCCTGCTGATCTCATGAAGTGCCAGAGAGGGGCACTGTTGCTCCCCCTTTCAATTTAGAACAGCTAATAATTACATTCGTACTTGTGTACAGATTCAGTGCATACTTATAAGGGCAAAAAGGGACAAAACTTGGATGAGTAAGGAGAAGATTGTTCTCTTCATTTCATTGTCCGTGTTGACTGGAGAAAACGCCTACAGATTCCTCTACAGAACTAGGATTGGGTGAGGGAGGCCTAGGTAGGTGAGGAAGGGGTAGAGTACTGTCTTTTTAACCCATATAGGAGTACTTCCATTCTCGGAGCGGGACGTGGGTGGCCTTGACCACCTGTGGGGACGTCCATCTCAGTACGTAGTGAGGACCACCAGGTTTGTCATTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU710780 lncRNA upstream 17426 55193527 ~ 55194279 (+) True LOC110528014
TU710779 lncRNA upstream 39991 55164275 ~ 55171714 (+) True G625042
TU710787 lncRNA upstream 41059 55170352 ~ 55170646 (+) True G625050
TU710777 lncRNA upstream 46298 55164275 ~ 55165407 (+) False G625042
TU710726 lncRNA upstream 107820 55103587 ~ 55103885 (+) True G624999
TU710827 lncRNA downstream 14766 55228677 ~ 55230776 (+) True G625085
TU710828 lncRNA downstream 20229 55234140 ~ 55234456 (+) True G625086
TU710829 lncRNA downstream 20829 55234740 ~ 55235046 (+) True G625087
TU710830 lncRNA downstream 21198 55235109 ~ 55235333 (+) True G625088
TU710831 lncRNA downstream 21444 55235355 ~ 55235614 (+) True G625089
XM_021608279.2 mRNA upstream 2997 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 12637 55197770 ~ 55199068 (+) True LOC110528013
XR_002474179.2 mRNA upstream 16643 55193493 ~ 55195062 (+) False LOC110528014
XR_005052710.1 mRNA upstream 31911 55178707 ~ 55179794 (+) True LOC118965383
XM_021609787.2 mRNA upstream 39505 55170794 ~ 55172200 (+) True LOC110528011
XM_021609796.2 mRNA downstream 99537 55313448 ~ 55315903 (+) True LOC110528019
XM_036983552.1 mRNA downstream 119186 55333097 ~ 55416079 (+) True LOC110528970
XM_021609800.2 mRNA downstream 291495 55505406 ~ 55508166 (+) True LOC110528022
XM_021609802.2 mRNA downstream 497724 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 578380 55792291 ~ 55798284 (+) True LOC110528971
TU710810 other upstream 3442 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 139318 55070632 ~ 55072387 (+) True LOC110528007
TU710684 other upstream 159017 55047296 ~ 55052688 (+) False G624962
TU710686 other upstream 159017 55047296 ~ 55052688 (+) True G624962
TU710327 other upstream 387506 54823637 ~ 54824199 (+) True G624628
TU710967 other downstream 258557 55472468 ~ 55472843 (+) True G625222
TU710986 other downstream 497762 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 857143 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 1268483 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 2105791 57319702 ~ 57323021 (+) True snrpe

Expression Profile