RNA id: TU711336


Basic Information

Item Value
RNA id TU711336
length 686
lncRNA type antisense_over
GC content 0.44
exon number 6
gene id G625531
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55313504 ~ 55314949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTGTTAGATCAGAAGTCTGTAGCAGAAGCAGAAAAAGTTAATTTAAACTAAACAAAGTGGGTCACTAGAGAGGTTACAGCCATCCTTTCATTGCAGACTTATGAAAGGTTTCTCTGAACATCAGAGACAGGTCTCACCTTTCTTGAGTGCTGTGGGGAGTCCCAACTGTCTCAACTGTGGCTCCATGGAGTGAGGGAACTGTTCCAGGGGTCCTTCATCAAGTGTTATGGCCATCCCTGCCTTGTTTCCTGCTCGTGCAAAATCCATCTCTTTAAACTGGCTGAAATACTCTTGTACCTCTTCCTTGGTTTTATTTGTGAATAGCACACCCACTTCTCCCCTCAGAAACCGGCTGACCTTGTGCAAATTGTCTTTGTACTCGCTTGTTGATCCTTTACCTATAGCGATCATCATGACTTTGTTTTTGCCAAAAAAGAATCGACTGTGTTTCCAGGCTGTCCTGATGTCTTTCAGTTTGTTGTTCCTCATGTTTGCCACAGAGAAGATGAACAGATGCTTGTAAATGTCCACACATTTCCGCAACTCTTCTATTAAGTTCTGTTTAGTTTCCAGACCCTTCTTGGCTGTTTTTGTTAGTGAAACTTTCTTGTCTCTCTTTGACTTCGGCATGGTCCTCACGTTGTGTAGACCTATGGAGGAAAAGGACCCCACGTGTTTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711159 lncRNA downstream 81748 55228600 ~ 55231756 (-) True LOC110528018
TU711241 lncRNA downstream 124748 55171062 ~ 55188756 (-) True G625472
TU711271 lncRNA downstream 142844 55170394 ~ 55170660 (-) True G625477
TU711235 lncRNA downstream 151317 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA downstream 151317 55161550 ~ 55162187 (-) True LOC110528015
TU711365 lncRNA upstream 44875 55359824 ~ 55360081 (-) True G625560
TU711373 lncRNA upstream 53691 55368640 ~ 55368849 (-) True G625568
TU711375 lncRNA upstream 54396 55369345 ~ 55369642 (-) True G625570
TU711377 lncRNA upstream 58449 55373398 ~ 55373642 (-) True G625572
TU711378 lncRNA upstream 60037 55374986 ~ 55375326 (-) True G625573
XM_021609792.2 mRNA downstream 4378 55229721 ~ 55309126 (-) False LOC110528018
XM_021609793.2 mRNA downstream 4378 55229721 ~ 55309126 (-) False LOC110528018
XM_021609794.2 mRNA downstream 4379 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA downstream 4379 55229721 ~ 55309125 (-) False LOC110528018
XR_005052610.1 mRNA downstream 20683 55290527 ~ 55292821 (-) True LOC118965300
XM_036983553.1 mRNA upstream 105517 55420466 ~ 55477160 (-) False LOC110528020
XR_005052611.1 mRNA upstream 105517 55420466 ~ 55477165 (-) False LOC110528020
XM_036983556.1 mRNA upstream 105517 55420466 ~ 55538752 (-) False LOC110528020
XM_036983555.1 mRNA upstream 105517 55420466 ~ 55553852 (-) False LOC110528020
XM_036983559.1 mRNA upstream 105517 55420466 ~ 55553852 (-) False LOC110528020
TU711245 other downstream 141304 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 238108 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1990673 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4354964 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 5007348 50304448 ~ 50306156 (-) True LOC110527964
TU711411 other upstream 118507 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1376374 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1519636 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1532013 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1538618 56853567 ~ 56869375 (-) False vamp3

Expression Profile