RNA id: TU711377


Basic Information

Item Value
RNA id TU711377
length 245
lncRNA type intronic
GC content 0.38
exon number 1
gene id G625572
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55373398 ~ 55373642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaacttgaaacatctgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttattgttcccagcacaaagtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacaacagcgaagagaaatgctcactaacagcgatataaacacatttttgcacaacatttgagagaaatatgcttcTTGTGCAtacggaacatttctgtgatcttttatttcaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711375 lncRNA downstream 3756 55369345 ~ 55369642 (-) True G625570
TU711373 lncRNA downstream 4549 55368640 ~ 55368849 (-) True G625568
TU711365 lncRNA downstream 13317 55359824 ~ 55360081 (-) True G625560
TU711336 lncRNA downstream 58449 55313504 ~ 55314949 (-) True G625531
TU711159 lncRNA downstream 141642 55228600 ~ 55231756 (-) True LOC110528018
TU711378 lncRNA upstream 1344 55374986 ~ 55375326 (-) True G625573
TU711379 lncRNA upstream 3518 55377160 ~ 55377399 (-) True G625574
TU711389 lncRNA upstream 18749 55392391 ~ 55399068 (-) True G625583
TU711400 lncRNA upstream 31719 55405361 ~ 55405740 (-) True G625594
TU711401 lncRNA upstream 32162 55405804 ~ 55406028 (-) True G625595
XM_021609792.2 mRNA downstream 64272 55229721 ~ 55309126 (-) False LOC110528018
XM_021609793.2 mRNA downstream 64272 55229721 ~ 55309126 (-) False LOC110528018
XM_021609794.2 mRNA downstream 64273 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA downstream 64273 55229721 ~ 55309125 (-) False LOC110528018
XR_005052610.1 mRNA downstream 80577 55290527 ~ 55292821 (-) True LOC118965300
XM_036983553.1 mRNA upstream 46824 55420466 ~ 55477160 (-) False LOC110528020
XR_005052611.1 mRNA upstream 46824 55420466 ~ 55477165 (-) False LOC110528020
XM_036983556.1 mRNA upstream 46824 55420466 ~ 55538752 (-) False LOC110528020
XM_036983555.1 mRNA upstream 46824 55420466 ~ 55553852 (-) False LOC110528020
XM_036983559.1 mRNA upstream 46824 55420466 ~ 55553852 (-) False LOC110528020
TU711245 other downstream 201198 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 298002 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2050567 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4414858 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 5067242 50304448 ~ 50306156 (-) True LOC110527964
TU711411 other upstream 59814 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1317681 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1460943 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1473320 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1479925 56853567 ~ 56869375 (-) False vamp3

Expression Profile