RNA id: TU711416


Basic Information

Item Value
RNA id TU711416
length 560
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G625604
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55412108 ~ 55412667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtttgcgtgtgtttgtgtgtgtcactcaCCATGTTCACACTGATGTCCGTAGTAACCTGGACCACACTGGCAGGTTCCAGTCACCCTGTCACAGGTGCCATTGTTCCAGCAGTCACACTTCAGCTGGCAGTTACCTCCAAATGTCCCCGGAGGACATTctatcacacagacagacagacagacacagagaggcagCATAACTAGTGTCCCATTTTCTGAATGAAAACCAGCACTGAGAGTTGAGTTATTACATTCAAAGCTATTTCCTATGATTTTGTAAAGGTGCACTGTCCAGTATCTCTCACCTGTGTCACAGTGagccccagtccagcccagaccACAGGTACATCTTCCAGAGACAGAGTCACACAGTCCTCCGTTACTGCAGTTACAGAGGATAGCACAGTCCTCTCCAAACCAACCAGGAGCACAGCCTGCCAATACACAGATATTACacataacaaacacacacacatattacaaacatagttcaaacacacacatatattacaAACCTTTAActtatagacagacagagacgcaaAGAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711415 lncRNA downstream 825 55410781 ~ 55411283 (-) True G625603
TU711402 lncRNA downstream 4937 55406931 ~ 55407171 (-) True G625596
TU711401 lncRNA downstream 6080 55405804 ~ 55406028 (-) True G625595
TU711400 lncRNA downstream 6368 55405361 ~ 55405740 (-) True G625594
TU711389 lncRNA downstream 13040 55392391 ~ 55399068 (-) True G625583
TU711418 lncRNA upstream 19242 55431909 ~ 55432109 (-) True G625606
TU711432 lncRNA upstream 44436 55457103 ~ 55457309 (-) True G625620
TU711433 lncRNA upstream 46089 55458756 ~ 55463413 (-) True G625621
TU711441 lncRNA upstream 54113 55466780 ~ 55467054 (-) True G625629
TU711443 lncRNA upstream 55950 55468617 ~ 55468827 (-) True G625631
XM_021609792.2 mRNA downstream 102982 55229721 ~ 55309126 (-) False LOC110528018
XM_021609793.2 mRNA downstream 102982 55229721 ~ 55309126 (-) False LOC110528018
XM_021609794.2 mRNA downstream 102983 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA downstream 102983 55229721 ~ 55309125 (-) False LOC110528018
XR_005052610.1 mRNA downstream 119287 55290527 ~ 55292821 (-) True LOC118965300
XM_036983553.1 mRNA upstream 7799 55420466 ~ 55477160 (-) False LOC110528020
XR_005052611.1 mRNA upstream 7799 55420466 ~ 55477165 (-) False LOC110528020
XM_036983556.1 mRNA upstream 7799 55420466 ~ 55538752 (-) False LOC110528020
XM_036983555.1 mRNA upstream 7799 55420466 ~ 55553852 (-) False LOC110528020
XM_036983559.1 mRNA upstream 7799 55420466 ~ 55553852 (-) False LOC110528020
TU711245 other downstream 239908 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 336712 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2089277 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4453568 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 5105952 50304448 ~ 50306156 (-) True LOC110527964
TU711411 other upstream 20789 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1278656 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1421918 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1434295 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1440900 56853567 ~ 56869375 (-) False vamp3

Expression Profile