RNA id: TU710953



Basic Information


Item Value
RNA id TU710953
length 652
lncRNA type intronic
GC content 0.41
exon number 1
gene id G625208
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55446676 ~ 55447327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cattacaatacattcataacagatctcacaacacactgtgtgccctcaggcccctactccactaacaCATATCTACAACCCAAAATACATAtctacgtgtgtgtatagtgcgtatgttatcgtgtgtgtgtatgcatgtgtctgtgcctatgtttgtgttgcttcacagtccctgctgttccataggGTTTACTTTGATCAgttcacacaaaaatacagtgcGAAACAGTGGAAGTGGGGATtgttttgtatggaggtcaatgagtgtcAAATTAGGTCAACATAATTCAAACACTACATAcgcacaacacacacatgcataccgaCACAatacacaaaacaaacaaacatacacacacttttgtgatggtgctgcatcagaagacctggcctccacaattacctgaccacaaccaaattgagatggtttgggatgagtaggaccgcagagtgaaggaaaataagccaacaagtgctcagcatatgtgggaactccttcaagactgttggaaaaacattcctcatgaagctggttgagagaatgccaagagtgtgtaaagctgtcatcaaggcaaagggtggcgactttgaagaatctcaaatataaaatgtattttgatttgtttaacactttttggttattacatcattc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU710950 lncRNA upstream 4415 55442060 ~ 55442261 (+) True G625205
TU710947 lncRNA upstream 9859 55436591 ~ 55436817 (+) True G625202
TU710944 lncRNA upstream 11726 55434654 ~ 55434950 (+) True G625199
TU710943 lncRNA upstream 12924 55433458 ~ 55433752 (+) True G625198
TU710941 lncRNA upstream 15735 55430617 ~ 55430941 (+) True G625196
TU710969 lncRNA downstream 26673 55474000 ~ 55474218 (+) True G625224
TU710970 lncRNA downstream 27713 55475040 ~ 55475310 (+) True G625225
TU711007 lncRNA downstream 78145 55525472 ~ 55528088 (+) True G625256
TU710995 lncRNA downstream 119655 55566982 ~ 55571742 (+) True G625244
TU711059 lncRNA downstream 178292 55625619 ~ 55626641 (+) True G625302
XM_036983552.1 mRNA upstream 30597 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 130773 55313448 ~ 55315903 (+) True LOC110528019
XM_021608279.2 mRNA upstream 237968 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 247608 55197770 ~ 55199068 (+) True LOC110528013
XR_002474179.2 mRNA upstream 251614 55193493 ~ 55195062 (+) False LOC110528014
XM_021609800.2 mRNA downstream 58079 55505406 ~ 55508166 (+) True LOC110528022
XM_021609802.2 mRNA downstream 264308 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 344964 55792291 ~ 55798284 (+) True LOC110528971
XM_036983565.1 mRNA downstream 660340 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 686629 56133956 ~ 56295859 (+) False foxp4
TU710771 other upstream 232765 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 238413 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 374289 55070632 ~ 55072387 (+) True LOC110528007
TU710684 other upstream 393988 55047296 ~ 55052688 (+) False G624962
TU710967 other downstream 25141 55472468 ~ 55472843 (+) True G625222
TU710986 other downstream 264346 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 623727 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 1035067 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1872375 57319702 ~ 57323021 (+) True snrpe

Expression Profile