RNA id: TU711444


Basic Information

Item Value
RNA id TU711444
length 296
lncRNA type intronic
GC content 0.37
exon number 1
gene id G625632
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55468920 ~ 55469215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcacagcctacttcaacttcgccaaacgggtgatgatttatcAAAAGTGCATTAGCGAAAAAAACACAATTGTTGCACAAATGTACTTAACCATttacatcaatgcctttcttaaaatcaatacacaactatattttttaaaactgcatatttagttaaaataaattaatgtcagcaggcaatattaactagggaaattgtgtcacttctcttgcgttctgtgcaacagagtcagggtatatgcagcagtttgggccgcctggctctttgcgaactgtgtgaagtccatttcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711443 lncRNA downstream 93 55468617 ~ 55468827 (-) True G625631
TU711441 lncRNA downstream 1866 55466780 ~ 55467054 (-) True G625629
TU711433 lncRNA downstream 5507 55458756 ~ 55463413 (-) True G625621
TU711432 lncRNA downstream 11611 55457103 ~ 55457309 (-) True G625620
TU711418 lncRNA downstream 36811 55431909 ~ 55432109 (-) True G625606
TU711453 lncRNA upstream 13639 55482854 ~ 55483172 (-) True G625641
TU711457 lncRNA upstream 26146 55495361 ~ 55495568 (-) True G625645
TU711461 lncRNA upstream 30984 55500199 ~ 55500434 (-) True G625649
TU711463 lncRNA upstream 35957 55505172 ~ 55505401 (-) True G625651
TU711465 lncRNA upstream 38508 55507723 ~ 55714702 (-) False G625652
XM_021609792.2 mRNA downstream 159794 55229721 ~ 55309126 (-) False LOC110528018
XM_021609793.2 mRNA downstream 159794 55229721 ~ 55309126 (-) False LOC110528018
XM_021609794.2 mRNA downstream 159795 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA downstream 159795 55229721 ~ 55309125 (-) False LOC110528018
XR_005052610.1 mRNA downstream 176099 55290527 ~ 55292821 (-) True LOC118965300
XM_021609799.2 mRNA upstream 97907 55567122 ~ 55571727 (-) True LOC110528021
XM_036981864.1 mRNA upstream 151338 55620553 ~ 55699308 (-) False pax7b
XM_036981865.1 mRNA upstream 151338 55620553 ~ 55699308 (-) False pax7b
XM_036981867.1 mRNA upstream 151338 55620553 ~ 55699308 (-) False pax7b
XM_036981868.1 mRNA upstream 151338 55620553 ~ 55699308 (-) False pax7b
TU711411 other downstream 34848 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 296720 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 393524 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2146089 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4510380 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 1222108 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1365370 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1377747 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1384352 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 1384602 56853817 ~ 56869375 (-) False vamp3

Expression Profile