RNA id: TU710969


Basic Information

Item Value
RNA id TU710969
length 219
lncRNA type intronic
GC content 0.45
exon number 1
gene id G625224
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55474000 ~ 55474218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctctcctcgctagcccaattattatttgatgatacatttgcctctttttctcagctgcaggaaaaTTTCAATCtccccaatcccactttttcctctatctccagactagaaactttgtcagggctaacacacctggatttcccaataggcctgcgaatacagctatagagagcatcttggagttgaacaagcttcctaggggcgcaatttcagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU710953 lncRNA upstream 26673 55446676 ~ 55447327 (+) True G625208
TU710950 lncRNA upstream 31739 55442060 ~ 55442261 (+) True G625205
TU710947 lncRNA upstream 37183 55436591 ~ 55436817 (+) True G625202
TU710944 lncRNA upstream 39050 55434654 ~ 55434950 (+) True G625199
TU710943 lncRNA upstream 40248 55433458 ~ 55433752 (+) True G625198
TU710970 lncRNA downstream 822 55475040 ~ 55475310 (+) True G625225
TU711007 lncRNA downstream 51254 55525472 ~ 55528088 (+) True G625256
TU710995 lncRNA downstream 92764 55566982 ~ 55571742 (+) True G625244
TU711059 lncRNA downstream 151401 55625619 ~ 55626641 (+) True G625302
TU711085 lncRNA downstream 200833 55675051 ~ 55729221 (+) True G625328
XM_036983552.1 mRNA upstream 57921 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 158097 55313448 ~ 55315903 (+) True LOC110528019
XM_021608279.2 mRNA upstream 265292 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 274932 55197770 ~ 55199068 (+) True LOC110528013
XR_002474179.2 mRNA upstream 278938 55193493 ~ 55195062 (+) False LOC110528014
XM_021609800.2 mRNA downstream 31188 55505406 ~ 55508166 (+) True LOC110528022
XM_021609802.2 mRNA downstream 237417 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 318073 55792291 ~ 55798284 (+) True LOC110528971
XM_036983565.1 mRNA downstream 633449 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 659738 56133956 ~ 56295859 (+) False foxp4
TU710967 other upstream 1157 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 260089 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 265737 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 401613 55070632 ~ 55072387 (+) True LOC110528007
TU710684 other upstream 421312 55047296 ~ 55052688 (+) False G624962
TU710986 other downstream 237455 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 596836 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 1008176 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1845484 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 2068664 57542882 ~ 57585844 (+) False G627035

Expression Profile