RNA id: TU710995


Basic Information

Item Value
RNA id TU710995
length 1290
lncRNA type read_through
GC content 0.47
exon number 6
gene id G625244
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55566982 ~ 55571742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCCAAGCCCGTTTATTTGACGTTTTCACTGGCTATTTACGTGAAGACACAACCATGCTAAGATTTTCATTGGCCATAATCAATGTCAATCAACTGAACAGCTAGGTTTCCCGCGCCCACCAGTGATTTCGCAATCCCTTTTACCAATCCTTAAAATCATATTTATTTGAAGCTCTCAAATCTGCTGTTTAGCCTACCTACCTGCATACTGCTGTAGACTACGACTCGTAGACCTCAAACATCGAGACTACCAGTAGCAGCACTGTAACGTTACCAATTCAATTTTATATTTGTCGATTCAGTAAGATTACTAATCCATAACCTTTGTATAATTTTTCTCTGTGTGATGATGAAACACAAATGTAATTTTTATTTCATGCTGTGGCTACATTCTAAACTACTAGTCTTCACTGGGCAACATATCCCAGtgaaggaaagagaaggagacaATAATAAAATCCATGTTATTACTATTATCCTGTCAACCATTATTATTTGTTCACAATGATTGGCCTGTGTATCATAATGAACAGTGCTGAGTAGGTGGGGTGAAGTTGATCATGCTGCTTGCAGTTCTTCAGCTTGTGACACTCAACACCACTCAGTCTTTCAGAACCAGGGGTGCTTTGACTGTAGCAGCAACCTCAGGCCCCATGAGCTCCTCTACAATGGCCAGGGCAAACTCAAAGCTGGTTCCTGGCCCACGGCTGGTGATCAGATGGCCATCCTTCTGGACCCGAGCCTCTGAGTATGTGTAGTGGCCTCCAGTCATCATCTTGTCCTTCGCACCAGGGTGGGTGGTGACCGTACTGCCGTAGGCAATACCATGTGCCAGCAGCGCCGTGGGACCTGCACAGACAGCAGCAATCAGCCCTTTCCTGCCCTCCTGGTCCTTCAACACCTCTTTTACAGCAGGGGACTCTGACAAGTTCTGGGCACCGAGAGCCCCCCCTGGTAGAAGAACCACATCATACGGACCCTGCTTGCGGGCATCCTCCAGGCTGGAATCAGGAACAAGGTAGATGTCTCTGCTGCACTGCACAGGGTCTTTGCCAGTCAACCCTGCCAACGTCACAGCAATCCCAGCTCTACGCATGACGTCCACAGGTATAACAGTTTCCATCTCCTCTGCACCCTTAGAGAGGATTACTAATGCCTTTTTGCCTGCCATTATTGAgcgagtgggtgagtgagtgtcaCAACAAGACAGCAAATATCTGTCAGAGGACTTTTATTTTGTCAGGAAGCAGAGCTCTCTGCAGGAACACACATCAACACTACAGCTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711007 lncRNA upstream 38894 55525472 ~ 55528088 (+) True G625256
TU710970 lncRNA upstream 91672 55475040 ~ 55475310 (+) True G625225
TU710969 lncRNA upstream 92764 55474000 ~ 55474218 (+) True G625224
TU710953 lncRNA upstream 119655 55446676 ~ 55447327 (+) True G625208
TU710950 lncRNA upstream 124721 55442060 ~ 55442261 (+) True G625205
TU711059 lncRNA downstream 53877 55625619 ~ 55626641 (+) True G625302
TU711085 lncRNA downstream 103309 55675051 ~ 55729221 (+) True G625328
TU711150 lncRNA downstream 218560 55790302 ~ 55790523 (+) True G625392
TU711152 lncRNA downstream 226699 55798441 ~ 55798681 (+) True G625394
TU711669 lncRNA downstream 270632 55842374 ~ 55842892 (+) True G625846
XM_021609800.2 mRNA upstream 58816 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 150903 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 251079 55313448 ~ 55315903 (+) True LOC110528019
XM_021608279.2 mRNA upstream 358274 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 367914 55197770 ~ 55199068 (+) True LOC110528013
XM_021609802.2 mRNA downstream 139893 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 220549 55792291 ~ 55798284 (+) True LOC110528971
XM_036983565.1 mRNA downstream 535925 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 562214 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 562216 56133958 ~ 56295859 (+) False foxp4
TU710967 other upstream 94139 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 353071 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 358719 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 494595 55070632 ~ 55072387 (+) True LOC110528007
TU710686 other upstream 514294 55047296 ~ 55052688 (+) True G624962
TU710986 other downstream 139931 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 499312 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 910652 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1747960 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1971140 57542882 ~ 57585844 (+) False G627035

Expression Profile