RNA id: TU711686


Basic Information

Item Value
RNA id TU711686
length 531
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G625863
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55870149 ~ 55872520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacagtatcataccaaaaacactatagtaattactacagcatcataccaaaaacactatagtaattactacagtatcataccaaaaacactatagtaattactacagcatcataccaaaaacactatagtaattactacagtatcataccaaaaacactatagtaattactacagcatcatccccaaaacacaaaacactatagtaattactacagtatcataccaaaaacactatagtaattactacagcatcataccaaaaacactatagtaattactacagtatcataccaaaaacactatagtcATTACTACAGCATCATCcaaaaaaacactatagtaattaatACAGCATCATCCCAAAAACACCatagtaattactacagcatcatcccaaaaacactatagtaattactacagtatcataccaaaaacactatagtaattactacagcatcataccaaaaacactatggtaattactacagcatcatcccaaaaacactatagtaattactacagtatcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711670 lncRNA upstream 24901 55844868 ~ 55845248 (+) True G625847
TU711669 lncRNA upstream 27257 55842374 ~ 55842892 (+) True G625846
TU711152 lncRNA upstream 71468 55798441 ~ 55798681 (+) True G625394
TU711150 lncRNA upstream 79626 55790302 ~ 55790523 (+) True G625392
TU711085 lncRNA upstream 140928 55675051 ~ 55729221 (+) True G625328
TU711689 lncRNA downstream 2654 55875174 ~ 55875523 (+) True G625866
TU711693 lncRNA downstream 6983 55879503 ~ 55879761 (+) True G625870
TU711701 lncRNA downstream 15331 55887851 ~ 55888078 (+) True G625878
TU711708 lncRNA downstream 20409 55892929 ~ 55893151 (+) True G625885
TU711709 lncRNA downstream 20750 55893270 ~ 55893601 (+) True G625886
XM_021611136.2 mRNA upstream 71865 55792291 ~ 55798284 (+) True LOC110528971
XM_021609802.2 mRNA upstream 155436 55711635 ~ 55714713 (+) False LOC110528024
XM_021609800.2 mRNA upstream 361983 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 454070 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 554246 55313448 ~ 55315903 (+) True LOC110528019
XM_036983565.1 mRNA downstream 235147 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 261436 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 261438 56133958 ~ 56295859 (+) False foxp4
XM_036983561.1 mRNA downstream 261440 56133960 ~ 56295859 (+) False foxp4
XM_036983563.1 mRNA downstream 261442 56133962 ~ 56295859 (+) False foxp4
TU710986 other upstream 155438 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 397306 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 656238 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 661886 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 797762 55070632 ~ 55072387 (+) True LOC110528007
TU711835 other downstream 198534 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 609874 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1447182 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1670362 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1706530 57579050 ~ 57596051 (+) False G627035

Expression Profile