RNA id: TU711693



Basic Information


Item Value
RNA id TU711693
length 259
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G625870
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55879503 ~ 55879761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagctttacaccactccagccgacgcttggcattgtgcatggtgatcttaggattgtgtgcggctgctcggccatggaaacccatttcatgaagctccctatgaacagttattgtgcttacgttgcttccagaggcagtttgaaactcggtagtgaatgttgcaactgaggacaaacTATTTTTACTCGCTTCGGGTACTCGgctgtcccattctgtgagcttgtaccacttcgtggctgaaccgttgttgctcgtaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU711689 lncRNA upstream 3980 55875174 ~ 55875523 (+) True G625866
TU711686 lncRNA upstream 6983 55870149 ~ 55872520 (+) True G625863
TU711670 lncRNA upstream 34255 55844868 ~ 55845248 (+) True G625847
TU711669 lncRNA upstream 36611 55842374 ~ 55842892 (+) True G625846
TU711152 lncRNA upstream 80822 55798441 ~ 55798681 (+) True G625394
TU711701 lncRNA downstream 8090 55887851 ~ 55888078 (+) True G625878
TU711708 lncRNA downstream 13168 55892929 ~ 55893151 (+) True G625885
TU711709 lncRNA downstream 13509 55893270 ~ 55893601 (+) True G625886
TU711785 lncRNA downstream 113012 55992773 ~ 55995187 (+) True G625960
TU711789 lncRNA downstream 122905 56002666 ~ 56004143 (+) True G625964
XM_021611136.2 mRNA upstream 81219 55792291 ~ 55798284 (+) True LOC110528971
XM_021609802.2 mRNA upstream 164790 55711635 ~ 55714713 (+) False LOC110528024
XM_021609800.2 mRNA upstream 371337 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 463424 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 563600 55313448 ~ 55315903 (+) True LOC110528019
XM_036983565.1 mRNA downstream 227906 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 254195 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 254197 56133958 ~ 56295859 (+) False foxp4
XM_036983561.1 mRNA downstream 254199 56133960 ~ 56295859 (+) False foxp4
XM_036983563.1 mRNA downstream 254201 56133962 ~ 56295859 (+) False foxp4
TU710986 other upstream 164792 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 406660 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 665592 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 671240 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 807116 55070632 ~ 55072387 (+) True LOC110528007
TU711835 other downstream 191293 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 602633 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1439941 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1663121 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1699289 57579050 ~ 57596051 (+) False G627035

Expression Profile