RNA id: TU711708


Basic Information

Item Value
RNA id TU711708
length 223
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G625885
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55892929 ~ 55893151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgtggtggtaaataaacagccaagaaaagtatagctgaaaactctctagacaagtagtgtggcctgcagtttatcacaatatactctacttcaggtgagcaaaatctagagacttccttagatttcgtgcaccacctgttgtttacaaatatgcacaaatatttttatacccaaaatacctcattttgtttgtcgcgttatgttcagaaatccacaggaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711701 lncRNA upstream 4851 55887851 ~ 55888078 (+) True G625878
TU711693 lncRNA upstream 13168 55879503 ~ 55879761 (+) True G625870
TU711689 lncRNA upstream 17406 55875174 ~ 55875523 (+) True G625866
TU711686 lncRNA upstream 20409 55870149 ~ 55872520 (+) True G625863
TU711670 lncRNA upstream 47681 55844868 ~ 55845248 (+) True G625847
TU711709 lncRNA downstream 119 55893270 ~ 55893601 (+) True G625886
TU711785 lncRNA downstream 99622 55992773 ~ 55995187 (+) True G625960
TU711789 lncRNA downstream 109515 56002666 ~ 56004143 (+) True G625964
TU711794 lncRNA downstream 115028 56008179 ~ 56011041 (+) True G625968
TU711866 lncRNA downstream 254887 56148038 ~ 56148362 (+) True G626033
XM_021611136.2 mRNA upstream 94645 55792291 ~ 55798284 (+) True LOC110528971
XM_021609802.2 mRNA upstream 178216 55711635 ~ 55714713 (+) False LOC110528024
XM_021609800.2 mRNA upstream 384763 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 476850 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 577026 55313448 ~ 55315903 (+) True LOC110528019
XM_036983565.1 mRNA downstream 214516 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 240805 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 240807 56133958 ~ 56295859 (+) False foxp4
XM_036983561.1 mRNA downstream 240809 56133960 ~ 56295859 (+) False foxp4
XM_036983563.1 mRNA downstream 240811 56133962 ~ 56295859 (+) False foxp4
TU710986 other upstream 178218 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 420086 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 679018 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 684666 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 820542 55070632 ~ 55072387 (+) True LOC110528007
TU711835 other downstream 177903 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 589243 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1426551 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1649731 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1685899 57579050 ~ 57596051 (+) False G627035

Expression Profile