RNA id: TU712144


Basic Information

Item Value
RNA id TU712144
length 6302
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G626285
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56289480 ~ 56295845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTATTGCATTTTATAATGCCATTGTCAATAATTAGTACAGATTACATGCAACTAGACCTACTGTACAGTTGTTTTATTGTCTGCATGGACAGACACAAGAAGATTCAGGTTACAAATACACAGATATATGTGTGTTTTATACAGCATGAGGAAAGGACAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAAAGGTCTCGGTGGCAAAGTCGCCTTTTTTAAAACCTCTTTTAGACCATCTTAAAAACCACTGCCTGCTCCTACTTTACCAATTCCCCTGGGTCACACTTTCAAAAAATGAAGAAACAGAACAAAATAAAAAGATAAAAGAGAGGTAAACAGAAACTAAGTAATGTTACAGAAAGTCACTGAATGTACACACATTCCTAAGATACAACCAGAGGACAGCTGAATGTACACACATTCCTAAGATACAACCAGAggacagccagaggacagctgaAGTGGTAgttccattttttgggggggctgtgAAGTTCATAATAACATGGGCAACTGTCCTTTACGTTCCCTTTTCCTCAACATGACACCGAAGAGCTGTCCAATCATAGAGCAGGGGCGGGGCCAATTAGGTCCCTGGAGTCACTAATGATCCAATAGGAAGAGTGCTTGTCCAAGAGATGATAGCGATGGTGATAGCGAAGAATGGTTTGAGGTATGGGAAGTAGCTTGTGGTAGATCAGTGCCTAGGGTTGGTTTGGTTAcggttgtggttatggttgtggTGGTCTGTTAGCTTGTAAGCCATGGCCACTCACAACACCTTTGGTTAGGATTCTAATTGGACAAATGCCATCAGGTGTTTGATTGAGGGCCACGCCCAGTTGTCCTATTGAGTGATTGACCGCTGTAAGTTAAAGGTCATCAAAGGAATGACTGTggtcaggggtcagaggacaCATATTGGCACATAAAGGACCCACAACATCACCTTTACATTGGTCCATCTTTAAAAGCAAGAGAGGGGCTACATATTTTCTTCAATgattttcctctttctctcattttttctgaggttttggtcCTGTCTTAGAGAAAAGTCCTTCTGAGGTATCAACAATACATAACGAAGTCAACTTGttgttttactgttgtttttctttttctttcctTAAAAATGCAGTACAGAGACAAAAGGTATCAAAATAGACCTAGCTAAGATAAATATACAAACAGCTGTTACCTAAACCACTTATCTAACTTtaattcttttattttttttgagatAATACACTTAAAAAATCATCGTCCCAGACGTTTTTATGAAGAAaacgagagaaaaaaagaaaggaaTAACTATTCAACAAAGATACCTGCAGCACTTAATATGATAAATACATACACTTCAGCATTAGCAATACAGTATAGGAATCCAAGCTGGAAGCTTTACAAAAACTAAATGAAGAAAAGAGAAAATCAAAAAGACATAATGGTAAAGAATGCCCTCGAGAGCTAAGCCAAGTGTTAATATAGAATAATACATCATAACAGCCAAACCAGAGAAGGAACAGAAGTGTCTATGGCGATCTGTCAACATCATCAACGAATGTCAATCTACATCTTGATAAAACAGCTTGGCAAACAGGTGTACCTTAAAGGATGAGAATTCAAACATCATATATTTACTGAATGCAGCAGCGCCTCTTTCGTGAGAGTTTGGATCATaacaataatagtagtagtaatcattCATTCCTTTGTAAGCTGTTATTATTGTCCGTCTCCCAGCAAGCTCTGTGTTTGTCTTTGGATAGTATCTTCAGTTACTCAGAGCCTCTCCTCAGCTGTCTGAACCAAGGGGCCAACAGGGGCCCGGCTCCTAGTGACAGGGGCCACTATTCGCCGTGAAGGGCCAGCTCCATGTCACAGGGCTTTAATTCCCAGCTCTGAGGCTTATTGACTGATACTAAGGGCCCTTTCGACTGAACACTGACTACAGCCGGTGAGTGTGTTTCCTTTATCGCTGCCATCTTAAAGCTGTTCTCTCCATTCATGTGTAGTGTGGGCCGCTGGCgtgtactagtgtgtgtgtggcccaatGGCGGGTGCAGGGCACTCATACATTCTGCCCATCATCACTCCTGACAACCAGCTTCCTGCCCCATTGAGTCGCAGCTAACGACTGGACTATCATTGGCTGCCGGCAAAGCCGGCTCATAAATATGCGTGCATACAATTAGAGCACCCAGTTAAGAGGCTTTTCACAGAGTTTTATGATAATGGACAGTACGGAGAGAGCCAATAATACACAGCTGAGAGTAGACCTTTTAAACATGGTGACCACTTCACTCTTCACTCTTAGGAGAACGCACCAGTTATCTGGTGTTTTAGGAGAGGTAGTCTATCTTTAACGGGGTGTAATGTTGTTGTAACGTCTCTTTGTTTTTGCGCTCACGCTCATGAATTTGGAGTTCAGATAGCCAGACAAGCTTTTTCAGCCCCACTTAATGTGTATTAACAGTAAGCTGTGTTTTGGTATATTTCACTATTATTATTgaggaagattttttttttaaaccagacaTATTTCTGGTCTCCAGTCTCCCATTTGCTTTTATTGTGAACCATTTTGAAAAGGAGGTAGTGTTATTTTTGGTTTTTACTCTCGGTGTCCCTCTCCCACTTTGTTTGTTATAAATCAGTCTGATGACGTGAAGCATCATAACGCTACTTCTACAGGAAACAGTGCTGTTTTACACAGGAAGTCAATACAAAGACTCCTTTATTAAAAAACAAAGAAAATGGTGCAAGAGTTGATTTGACAAAACTGTTCCCAAATTTTGTTTTAGAAAAAAGACATAAGTTGACATGTCCCTTGGTGTGCTCCTTTCACATTGGTATGATTTTGTCATTTGTCAGTTGTTCTCTCTTTGCTGTAAATATCACAAATGGTCATAATGGTATGTCTGTTCTGAAAAACCCTCCGTTTGTCTACTGATGTGATGTTTGGAATGACAGCCAGCTTCAAGCAGTCTCTATCACAACTACTCACAGACTAGGGGATTATGAACGTGTTTCTATAGCAACGTGAGAGCATGAAGACATTATAAGAGCGAAACATTATCATTTTGTTCCTATTTATTATAACACCTGTCCTTTTTGGTATTTGTTAAACTGTTGTGTCTGCTAGAGTATACTGTAGGTGAGGAGTAAAGAAAGTACATTAAGTAAACTGTTCACTGCTAGACAATGGGACTTTTGGTCCTATTCAATCAAACCGGGAGCCGGGTCAGAAAAATGACATTCTCCTGCATAGCACAAAGGGATGTTTGAATGTATAGAGTTTCACAATGAAAATATTGTTTTGGTTGAGGAAATTAATCAAAACATGCATTATTACAGtgcaataaaaatgtatttttgttttacaCGGTATCCCAGTTAATGGACAACTGACAACAGCCCACTTCTTTTTTTGCTGGCTTCTAGTgtcacatacaggtatataaatgTTGTGTTCAAGTGCCTAATGAGGGTAAGATAATTATTAGTCATCTTTAACCCTGAATCCCATCTTAGGCttgcctacagcagagcctgtcATAGGGTTGTGTTTGAAACACAGGTAGCCTGAGCATGGAGAGATAGAGATTTAAATCCTAAGTGCTTTCTTTCTTTATgttTGTTAATACTGTTTTTGGCCTTCAACCATAGCATGCCTAATGTTAGTCGTCATTTGCACCAGTTAAACATATGTAAAAAAGATTTTAACATCACCAAATTCTATTTAGCATTTTATACTTTGGTTTTTGGAATGGTCAGTACTGTCATGAACAAATTCAACGTAAGAGTTACGATAATACAATAATCATTTAAATGTCAGATGTTTATTGTCTTTTGGCCAGTTCTTTAGAGGAAAAACTCAAAAGGGGAAAAATAAACTACAGGGTTTTTGGTTTTCTACACATTTCTTTGGTTACCtgtaacaaaaataaaatggGAGAAAAAGcagaaaatacataaaaaataacGTGTTTAAATTTGGTATGGCACTGCAGAGAAGGTAATGCTTTTATGCTCACTGAAAACAAAAGACTTTAAATCTCACGTGCTATTCCTTTGAGTTCAACTCACACAGTGAATTGCAGACAGCTtctatacagtaactatagtaacaaTAGAACTTTGAAATGAAACTGAGCAGAGTTGCCACGTTTTGGTGTCCCACACAAAGAATTCCCCCTTACTTCTTTAACATTTTGCACACACTTCCGGGCAGAAATTTGTGGGATGAGGTATTCTCTGACTGCCATAATATATTTTTTCAAGCATTGCTTTGTATCACAGCTGATGTTTCTCAACTAACTACGAGAAGATAAAATAAAAAGGAATGAAAGTTAGTTAAAAAGGAATAATACAAATGGATGATAATGTTGGGATTATTGGTGAGTGTTCTCAGGAGCTGAGGCCCTCGATTCTAAGTGCTATTCTCAATCTCCTGCCATCTAAACTGGCAAACCCAGACACACAGAAAGGTATTCATggtgggctggggtatagggaatTTTGGGACAATACTGCACTTTCTTTGCCACCAATACTAGTTTGGAATGGTGTGAACAAGCAGAGTTAATAAAAACTAAAAACTAAATTTTTACAAAATACACTTTGAAACAGAATTATATCACCATGGAAATATGAATCCtaaaaaataaatgaagataaCATCAAAGAAAGAAGGAAGTGAAAAAGCCACCACTTTTTGGATATAAAATGTTTTCTATTCCATAATAAATTCCATAATAAACTATTTTAGTCAGATATCTCTGTGTGGAtgatctctccttcctccccctctcaggTTGCCCTGTGCCCATCACTCTCACACATGAAGGAGGAGTAAAGCACCAAAGggtcttttttgggggggaaacaaTGTCTTCTTTATTTGTTTGTCATAATGAGTAAAGAGAGTCTTGTCTGGCTTGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGACAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGACAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAATCCTGCAATCCAGTCTCAGTCCCACCTATGGATCACTGACTGGTTTGTAAGCTTGGTTTCTGATGTGTGAGCAGGTGAATCCTTGAGAAAACCGCTGTTCTTCCTTCCATCTATAAGCCCAGCAGTTCTTTCAGGCAAAagaagaaaagaaaaagaaaCTAACATGAccggagaagaggaggagagttaTACACCTCCTGGTGACTGTTCCAAACAATATATACACATGAtctgatgtgtgtgtctctccacactctctctcacacacctgtatgtataTTGTAGTGGTGTGAACATCAAACTACCAGCACTAAAGGACTGTAGGGCGGGCAGACCATCTGTGTGAAtcaacagggagaggagagaggagaggggaccctCCCTCCATATCACCACTGAGAGCTGTCTCTCTGACAATACGCTGCTCATCGGGTGAGGGtggagggggtgaggaggagggggtgaggtggGTGAAAATGTGTGGGAATAAAGCAATGCTCCAGAGTGTTATTTTTGCGTCGGTATGTAATGGAGGTCTAACCCTGTTTGTCAATGTTGTTGGTTTCTTGCTTTATAAAAATCATGatctttatcttttttttttatctctatCTTGTTTTTTTACGTGGTCATCATTTCGCTTCACTCCAATGGAGCGGGTGGGATTAAACCTCAAAGTCCCGTCCACTGGTTCAGCTCATCCAATCCTACTCCAGCTCCTCGGTGGGAAGCTCATCATCCAAATCGTGGTCATCGCGATCGCTAGGCAATGCCATGTTCTGAGTGACAGTTGCCATGAGCGACATGGAGCGGCTGTCCTCCTCGATCTCAGTGGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU712066 lncRNA downstream 146879 56134512 ~ 56142601 (-) True G626213
TU711707 lncRNA downstream 396735 55892467 ~ 55892745 (-) True G625884
TU711688 lncRNA downstream 416964 55870757 ~ 55872516 (-) True G625865
TU711685 lncRNA downstream 420289 55868938 ~ 55869191 (-) True G625862
TU711655 lncRNA downstream 463212 55826061 ~ 55826268 (-) True G625832
TU712153 lncRNA upstream 10808 56306653 ~ 56306858 (-) True G626294
TU712158 lncRNA upstream 13452 56309297 ~ 56309592 (-) True G626299
TU712255 lncRNA upstream 90330 56386175 ~ 56386471 (-) True G626367
TU712257 lncRNA upstream 91589 56387434 ~ 56387655 (-) True G626369
TU712267 lncRNA upstream 98502 56394347 ~ 56394571 (-) True G626379
XM_021609801.2 mRNA downstream 554459 55727429 ~ 55735021 (-) True LOC110528023
XM_036981871.1 mRNA downstream 590172 55620553 ~ 55699308 (-) False pax7b
XM_036983573.1 mRNA upstream 186528 56482373 ~ 56515656 (-) False tfeb
XM_036983570.1 mRNA upstream 186528 56482373 ~ 56555348 (-) False tfeb
XM_036983569.1 mRNA upstream 186528 56482373 ~ 56593011 (-) False tfeb
XM_036983571.1 mRNA upstream 186528 56482373 ~ 56593011 (-) False tfeb
XM_036983572.1 mRNA upstream 186528 56482373 ~ 56593011 (-) False tfeb
TU711411 other downstream 855408 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1117280 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 1214084 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2966649 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 5330940 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 395478 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 538740 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 551117 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 557722 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 557972 56853817 ~ 56869375 (-) False vamp3

Expression Profile