RNA id: TU713155


Basic Information

Item Value
RNA id TU713155
length 1223
lncRNA type intronic
GC content 0.40
exon number 2
gene id G627175
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56495308 ~ 56496632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacggtgtgtcgctctctctcacacggTCGGTCTTGctctcaataataataataataatagagataatagtataatactaataataagtaagttactatGCAGAttttattcagtgtccctcaggctatggcaggcaaatacatatttggctggaAGAGGAGCCGTGGCTCCTTCTCCCATGAGTAtgtttagtttttcctctgggtttaatAAGTTAACATTTGTAATAAATGTAGTAAtatctgtgaataatgaatctcttggtGAGGAATATTTCTCACAGTAacggagaaagtgcatctctgtttctacctcccctgtcgcacagtgaccacatacacgctcctctttgggtagccatgtctttacatctctgtctctacctcctctgtcgcacagtgaccacatacacgctcctcctAGTGTAGCCATGtttttttatgtctgccggtttctattgccaattggtggtcactcagcctgtacatggtaaggatctgtctctgcttcgtatctctgacagagtagagataatcagccaattcatattctctgtttagggtcagatagcagtttagtcggctttgggatttatTTTTTTCGTTTTTCCAATGTTGTATATATGTCctttgattttgtttattggaattctttcttttgaagcagtgctggtgtcagcttggttggtgaggtccaacaccagctgactgagagggctcgtttctgggctcagctcttgggtttggtcagtagtgtgatggtgtttattaattagtgtgtgtaaggtgtatataggGTCAGTAGTGAGAtggtgtttattaattagtgtatGTAAGGTGTATATAgggtcagtagtgtgatggtgtttattaattagtgtatGTAAGGTGTATATAgggtcagtagtgtgatggtgtttattaattagtgtatGTAAGGTGTATATAGGGTCAGTAGTGAGAtggtgtttattaattagtgtgtgtaaggtgtatatatggtcagtagtgtgatggttagggagaaagccaatttgacatttacttattacagtGGTTTTCTTGAAGAAaagtttgaattcttgaattctaaatgctACAGAAACCCTTTCTCAAGTTACTGTttacgcaaattcccctgtaattattggggtctgatttgtctccacttttgtggttaggggagatgagcccctggttccagacatcagggaagtagcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713145 lncRNA downstream 3352 56491664 ~ 56491956 (-) True G627172
TU712297 lncRNA downstream 68349 56426750 ~ 56426959 (-) True G626402
TU712272 lncRNA downstream 95994 56399103 ~ 56399314 (-) True G626384
TU712267 lncRNA downstream 100737 56394347 ~ 56394571 (-) True G626379
TU712257 lncRNA downstream 107653 56387434 ~ 56387655 (-) True G626369
TU713274 lncRNA upstream 252093 56748725 ~ 56750461 (-) True G627281
TU713288 lncRNA upstream 317965 56814597 ~ 56814801 (-) True G627295
TU713295 lncRNA upstream 320670 56817302 ~ 56817561 (-) True G627300
TU713300 lncRNA upstream 326488 56823120 ~ 56823415 (-) True G627305
TU713301 lncRNA upstream 328093 56824725 ~ 56825042 (-) True G627306
XM_021609801.2 mRNA downstream 760287 55727429 ~ 55735021 (-) True LOC110528023
XM_036981871.1 mRNA downstream 796000 55620553 ~ 55699308 (-) False pax7b
XM_021609806.2 mRNA upstream 102611 56599243 ~ 56604594 (-) True tmem183a
NM_001124727.1 mRNA upstream 220244 56716876 ~ 56720187 (-) True myog
XM_021609808.2 mRNA upstream 260434 56757066 ~ 56772425 (-) False mdm4
XM_021609807.2 mRNA upstream 260434 56757066 ~ 56772426 (-) True mdm4
XM_021609810.2 mRNA upstream 276183 56772815 ~ 56796284 (-) False sort1a
TU711411 other downstream 1061236 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1323108 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 1419912 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 3172477 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 5536768 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 194691 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 337953 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 350330 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 356935 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 357185 56853817 ~ 56869375 (-) False vamp3

Expression Profile