RNA id: TU712439


Basic Information

Item Value
RNA id TU712439
length 1477
lncRNA type intronic
GC content 0.36
exon number 2
gene id G626528
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56688769 ~ 56690335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctctctctctctctgtgttctccctcgaccgctctctttctctcttaagcacacacacagatccaaGGCACACTCTCTTTCTGTTAAAATGTCTCTTACTTGTTCATTCAATAATTtgttccctctatctttctctctctctctccctttctcctgtccTCATCTGTTCAACTAGAATCCATTACAAAGGCAAATTAAACTAAACATTCAGTACAAGCTGTGCTGTGCACAGGAAAACCCAAATGGGATCCAAAATAACAACTTGTTAGGTTCATTTTTTGGTCCTGTACTGTGTGTTGCACCTTTCACCCACTGTCTCCCCAACTCACTGGagcatagaatagaatagaacagaatagaatagaacagaatagaatagaacagaatataatataacagaacagaatagaacagaatagaacagaatagaatagaacagaatagaaaagaacagaatagaatataacagaatagaatataacagaatagaaaagaacagaatagaatagatcagaatagaatagaacagaatagaatagaacagaatagaacagaatataatagaacagaatagaacagaatataatagaacagaatagaacagaatagaatataatagaatagatcagaatagaatagaacagaatagaacataatagaacagaatagaatagaacagaatataatataatataatataatagatcaggatagaatagaacagaatagaatagaacagaatagaacagaatagaatataatagaatagatcaGAATAGAATAgatcagaatagaatagaacagaatagaacagaatagaatagaatagatcaGAATAGAATagtacagaatagaatagaatagaatagaacagaatagaacagaacagaacagaacagaacagaatagaatagaacagaatagaatagaatacaacagaatacaacagaatagaacagaacagaatagaacataacagaatagaacagaaatgCAGTTTTCACAAACTGTTTGAGATAAGAATTTTAATGGCCACAATATCGCCAGGAAAACACATTGTATTTTCTCTCAGATTATTATAGAAGCAGTACTAAAAGAGTAAGGAAGTTTAGAGCAACGTTTAGAGAAACGTTCATTGCCCATTCCACAGAGTTCCCTGAATATTCCTGAAGTGTGTACCTGGTGCTGTGATGTTCCTGTGTGAAGTGATGGGATGGGGAGTCTTGGGCCTGCAGCAGCCAGGAACATCTGTCTCAACTGGGGACAGTCACAGCCTGTTAGAACTCTGGAACTGGGATCAGCACTTCCATTGGTGCTGCTGTAGGAAGCTGTAGAATAGATACACAAAGAGATATGGAAGGACAGGTAGATAGAGGAGGCATAGccatctcactcccacacatTCTGAGGGACCAGAGGGCCTCACCAGGACAACAATATCACATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU712443 lncRNA upstream 51224 56612469 ~ 56637545 (+) True G626531
TU712365 lncRNA upstream 163046 56525382 ~ 56525723 (+) True G626468
TU712295 lncRNA upstream 262795 56425734 ~ 56425974 (+) True G626400
TU712208 lncRNA upstream 319260 56342181 ~ 56369509 (+) True G626323
TU712181 lncRNA upstream 364828 56323740 ~ 56323941 (+) True G626310
TU712506 lncRNA downstream 38065 56728400 ~ 56728632 (+) True G626594
TU712521 lncRNA downstream 47626 56737961 ~ 56740360 (+) True G626598
TU712522 lncRNA downstream 58804 56749139 ~ 56750289 (+) True G626599
TU712527 lncRNA downstream 60692 56751027 ~ 56766586 (+) False LOC110528029
TU712525 lncRNA downstream 64433 56754768 ~ 56766586 (+) True LOC110528029
XM_036984489.1 mRNA upstream 312707 56375199 ~ 56376062 (+) True mdfi
XM_036983563.1 mRNA upstream 392910 56133962 ~ 56295859 (+) False foxp4
XM_036983589.1 mRNA downstream 7428 56697763 ~ 56716813 (+) True ppfia4
XR_002474181.2 mRNA downstream 60469 56750804 ~ 56759223 (+) False LOC110528029
XR_005052614.1 mRNA downstream 126946 56817281 ~ 56842143 (+) False LOC110528032
XM_036983591.1 mRNA downstream 126947 56817282 ~ 56842143 (+) False LOC110528032
XM_036984435.1 mRNA downstream 158171 56848506 ~ 56849449 (+) True LOC110528976
TU712312 other upstream 203465 56482394 ~ 56485304 (+) True G626417
TU711835 other upstream 609840 56071054 ~ 56078929 (+) True G626004
TU710986 other upstream 974058 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 1215926 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 1474858 55211705 ~ 55213911 (+) True G625038
TU712869 other downstream 629367 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 852547 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 888715 57579050 ~ 57596051 (+) False G627035
TU712996 other downstream 888715 57579050 ~ 57596051 (+) False G627035
TU712999 other downstream 888715 57579050 ~ 57596051 (+) True G627035

Expression Profile