RNA id: TU713306


Basic Information

Item Value
RNA id TU713306
length 581
lncRNA type intronic
GC content 0.44
exon number 1
gene id G627311
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56830524 ~ 56831104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGCACATaatctgtcttctcttgagagccaggtctgcctacgacgccctttctcaatagcaagactatgctcactgagtctgtacatagtcaaagctttccttaagtttgggtcagtcacagaggtcaggtattctgccactgtgaactctctgtttagggtcagtcacagtggtcaggtattctgccactgtgtactctctgttaagggccatatagcattctagtttgctctgtttctttgttaattacttgacacattggaaataattatctttttgttttctcatgatttggttgggtctaattgtgttgctgttctggggctctgttgggtctgtttgtgtttgtgaacagagccacaggaccagcttgcttaggggactcttctacAGCTtaaatcgcttccttttaggtggttgaagaattttaacagctcttttctaggtgatgctgtaggccctccttggttggtgacagaagcaccatatcatcaacaaacagtagacatttgatatcagattctagtagggtgaggccgggtgctgcgaACTGTTCTAATGCACTCGcaaattcgttgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713305 lncRNA downstream 91 56830063 ~ 56830433 (-) True G627310
TU713303 lncRNA downstream 1488 56827192 ~ 56829036 (-) True G627308
TU713302 lncRNA downstream 4211 56826035 ~ 56826313 (-) True G627307
TU713301 lncRNA downstream 5482 56824725 ~ 56825042 (-) True G627306
TU713300 lncRNA downstream 7109 56823120 ~ 56823415 (-) True G627305
TU713308 lncRNA upstream 2869 56833973 ~ 56834292 (-) True G627313
TU713309 lncRNA upstream 3246 56834350 ~ 56835092 (-) False G627314
TU713313 lncRNA upstream 9475 56840579 ~ 56842129 (-) True G627316
TU713339 lncRNA upstream 65147 56896251 ~ 56896997 (-) True G627342
TU713340 lncRNA upstream 66988 56898092 ~ 56898535 (-) True G627343
XM_021609811.2 mRNA downstream 24511 56796848 ~ 56806013 (-) True psma5
XM_036983590.1 mRNA downstream 33920 56772815 ~ 56796604 (-) True sort1a
XM_021609810.2 mRNA downstream 34240 56772815 ~ 56796284 (-) False sort1a
XM_021609807.2 mRNA downstream 58098 56757066 ~ 56772426 (-) True mdm4
XM_021609808.2 mRNA downstream 58099 56757066 ~ 56772425 (-) False mdm4
XM_021609813.2 mRNA upstream 22707 56853811 ~ 56869607 (-) False vamp3
XM_036983592.1 mRNA upstream 50227 56881331 ~ 57017276 (-) False LOC110528035
XM_036983593.1 mRNA upstream 50227 56881331 ~ 57017276 (-) False LOC110528035
XM_036983594.1 mRNA upstream 50227 56881331 ~ 57017276 (-) False LOC110528035
XM_036983595.1 mRNA upstream 50227 56881331 ~ 57017276 (-) False LOC110528035
TU713244 other downstream 134433 56691323 ~ 56696091 (-) True G627254
TU711411 other downstream 1396452 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1658324 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 1755128 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 3507693 53305536 ~ 53322831 (-) True G622985
TU713310 other upstream 3481 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 15858 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 22463 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 22713 56853817 ~ 56869375 (-) False vamp3
TU713291 other upstream 22713 56853817 ~ 56869451 (-) True vamp3

Expression Profile