RNA id: TU714070


Basic Information

Item Value
RNA id TU714070
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G628011
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57861928 ~ 57862168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttatgtacatattcgttatccccttacacttgtagtaaggtagtagttttggaattgttagctagattacttgttggttattactgcattgttggaactagaagcacaagcatttcactacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttttatttgatcatgttgtggggctgctttcctgcaggagggactggtgcacttcacaatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714006 lncRNA downstream 72930 57786960 ~ 57788998 (-) True LOC110528052
TU713877 lncRNA downstream 151083 57710487 ~ 57710845 (-) True G627835
TU713500 lncRNA downstream 259886 57579048 ~ 57602042 (-) False LOC110528047
TU713498 lncRNA downstream 259886 57583239 ~ 57602042 (-) False LOC110528047
TU713499 lncRNA downstream 265873 57579048 ~ 57596055 (-) False LOC110528047
TU714072 lncRNA upstream 1191 57863359 ~ 57863604 (-) True G628013
TU714077 lncRNA upstream 3754 57865922 ~ 57866160 (-) True G628018
TU714724 lncRNA upstream 37634 57899802 ~ 57954090 (-) True G628592
TU714789 lncRNA upstream 135683 57997851 ~ 58005983 (-) True G628649
TU714794 lncRNA upstream 137820 57999988 ~ 58008064 (-) True G628654
XM_021609839.2 mRNA downstream 56660 57794775 ~ 57805268 (-) True LOC110528053
XM_021609838.2 mRNA downstream 72769 57782135 ~ 57789159 (-) False LOC110528052
XM_021609837.2 mRNA downstream 103397 57752075 ~ 57758531 (-) True LOC110528051
XM_021609835.2 mRNA downstream 132611 57712894 ~ 57729317 (-) True LOC110528050
XM_021609834.2 mRNA downstream 132616 57712894 ~ 57729312 (-) False LOC110528050
XM_021609843.2 mRNA upstream 259388 58121556 ~ 58138678 (-) False LOC110528056
XM_021609844.2 mRNA upstream 259388 58121556 ~ 58138678 (-) True LOC110528056
XM_021609845.2 mRNA upstream 317690 58179858 ~ 58192252 (-) False LOC110528058
XM_021609846.2 mRNA upstream 317690 58179858 ~ 58192252 (-) False LOC110528058
XM_036983610.1 mRNA upstream 317690 58179858 ~ 58192253 (-) False LOC110528058
TU713380 other downstream 803358 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 992477 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 992553 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 992553 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 1009627 56846962 ~ 56852301 (-) True G627323
TU714707 other upstream 9882 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 255022 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 564007 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 829649 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 829649 58691817 ~ 58695767 (-) True LOC110528083

Expression Profile