RNA id: TU714827


Basic Information

Item Value
RNA id TU714827
length 1606
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G628681
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58051984 ~ 58055214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACTCAGCACTGAGTCGTGCAGACAGAGGGGTATTGCTTTTTCAGTCACTATTTGTATTATATGATTCAACATGACAAACAAGGATGATCCATCAATCTTTGCAAAAAGCTTTTGTCTTTTGAATTTTGTTTGAGAGCAAATAGACcgagggctctattcaatccgcatTGCGGATGTTCAAcgttacagcgtgattgaaatttaaaggccaTGTCCCTGCGTTAGTGGAGACAGCATTCACGTTAAACCCTGCATATTTCGACTTAATCGGAAATTACCTTCAAATGTCTTTTGAGCAATCTGTAACGATTCACCGAtactgattgaatagagcccctaATTTCAGACAGAGGTTAGTACATCCTGTTGTATGTACTGGTATAGAAAACAGAAGGCTGTTTGTCAATTGATAGATCTAATAAAACATACATTCATAAAATATGGAATTTCTATTGAACtccagtgtttaaaaaaaaaagtgtctcaGGAGAAAAATTTGGAAACATTATTGAAATGTCACCATAGTTATACAATGCATATTCAGGGAATATAATGAGCTTCTTCTCTAATAAAAAGAGACATAGACCACTTATTCAGGAAATCAAACATAGGTGCATTAGAAAACCATTCTCTTGATTGCACAGTGGAACTAGGACCGTCAATAATATTGTTTTCAAAGTATTTAGATAAAAACATTCCACATATAGCACTTTCCCTATTCCTTGTTTTGTCCTTACCACCACAGAATCAAAACACTATAATCACAATGAGTCATCATCCATACATCTGTTCTACAGTAGTTGTGCGCAATACAGCTGAACCAGGGAGAGAACACAGTGCTTCTCTCCTAGGGTCCTTCGAAAGTTTACTGTGTGAGATTGTGACTCCGTACAGTCTTTCATAGCCAAATTAGAACTGGCTTCCTTCTTAGTGGAGGAGACTTGGAATTTCTGGTGAGTCGAGTAGGTTGTTGCTGTTTGTCCACTGTCGGGTTCAGGTCCAGGGTCTTCTTGTGCCATGTAAGTAGACAGGGGCCTGGGGACAGTTCTCAGGGGAACCATAGGAGAAGCTGTGTGCTGGGGGACACAGCTCAGTGCTCCAGCCCCTGCCAGTCTCTCGCTTACTGTATGCTAGGCTATCACTCAGATCCATTGTAACGTATACTTAACTGATACATTAATATGAATAGAATCTCTCTTTGTATACAACAACATTTAAATCATTTGTGGAGATTAAGGCAGTccatacatttttacaaacaagacatgaaacatatcTGAATAGGAAAAACAAAGGCTATGGTACTCAAGTCCCTTCATATCTGTACTCTTGAAGTTTCAATCTCTCAAAGAAGAGGTCTTGAAAAGTTAACCAAAATGTCACCCGGACATTGTAGTTTCTCTGATAGTCATAGATCAATTCCCATGAGTTCCGACTAGGCCTCAGAAGCCTGGGGCTAGATTTGAAAATCGGCTGGCTGGAGAAGCCTTGAGACTGAAGTTATACGTGCACCGAGGGCACACTTCTGTTGAGCACCTGGACACGCATCAGCTGTACACTGGTCATGATCTTCTTCTGGTGGCCCATCAGTGTCACCCCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714733 lncRNA downstream 36394 58013683 ~ 58016772 (-) True G628596
TU714794 lncRNA downstream 45102 57999988 ~ 58008064 (-) True G628654
TU714789 lncRNA downstream 47183 57997851 ~ 58005983 (-) True G628649
TU714724 lncRNA downstream 99076 57899802 ~ 57954090 (-) True G628592
TU714077 lncRNA downstream 187006 57865922 ~ 57866160 (-) True G628018
TU714847 lncRNA upstream 38276 58093047 ~ 58093260 (-) True G628697
TU714850 lncRNA upstream 41431 58096202 ~ 58096437 (-) True G628700
TU714855 lncRNA upstream 51969 58106740 ~ 58106998 (-) True G628705
TU714858 lncRNA upstream 54753 58109524 ~ 58109740 (-) True G628708
TU714862 lncRNA upstream 57650 58112421 ~ 58112676 (-) True G628712
XM_021609839.2 mRNA downstream 247898 57794775 ~ 57805268 (-) True LOC110528053
XM_021609838.2 mRNA downstream 264007 57782135 ~ 57789159 (-) False LOC110528052
XM_021609837.2 mRNA downstream 294635 57752075 ~ 57758531 (-) True LOC110528051
XM_021609835.2 mRNA downstream 323849 57712894 ~ 57729317 (-) True LOC110528050
XM_021609834.2 mRNA downstream 323854 57712894 ~ 57729312 (-) False LOC110528050
XM_021609843.2 mRNA upstream 66785 58121556 ~ 58138678 (-) False LOC110528056
XM_021609844.2 mRNA upstream 66785 58121556 ~ 58138678 (-) True LOC110528056
XM_021609845.2 mRNA upstream 125087 58179858 ~ 58192252 (-) False LOC110528058
XM_021609846.2 mRNA upstream 125087 58179858 ~ 58192252 (-) False LOC110528058
XM_036983610.1 mRNA upstream 125087 58179858 ~ 58192253 (-) False LOC110528058
TU714707 other downstream 179835 57872050 ~ 57873331 (-) True G628575
TU713380 other downstream 994596 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 1183715 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 1183791 56853567 ~ 56869375 (-) False vamp3
TU714864 other upstream 62419 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 371404 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 637046 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 637046 58691817 ~ 58695767 (-) True LOC110528083
TU715243 other upstream 652801 58707572 ~ 58713574 (-) False sfrs3

Expression Profile