RNA id: TU714310


Basic Information

Item Value
RNA id TU714310
length 241
lncRNA type intronic
GC content 0.34
exon number 1
gene id G628240
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58270805 ~ 58271045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGCAGAGATACCAAAACAAACTATTCTTAAAATCAACATGCAACAAAGCATGCTGGAAAATATAATAATGAGGCAACTCCCACATCTTTTTCTATCTGAGTGAGTAAACGGAAACCTTAGGAGTTGATGGAAAACTTGACAAGTGACGTGTTTTAATAAACTAATTAGACACATTTTGGCAGTCTTGTTACAAAAGTTTGAACAGAAATGAAATGGTTcgttggatcagtctaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714296 lncRNA upstream 7011 58262985 ~ 58263794 (+) True LOC110528978
TU714295 lncRNA upstream 8060 58261752 ~ 58262745 (+) False LOC110528978
TU714297 lncRNA upstream 9560 58256890 ~ 58261245 (+) False LOC110528978
TU714291 lncRNA upstream 28554 58240412 ~ 58242251 (+) True G628224
TU714285 lncRNA upstream 65584 58205001 ~ 58205221 (+) True G628218
TU714333 lncRNA downstream 26743 58297788 ~ 58364064 (+) True G628255
TU714425 lncRNA downstream 172879 58443924 ~ 58448516 (+) True G628344
TU714434 lncRNA downstream 181935 58452980 ~ 58456770 (+) True G628351
TU714456 lncRNA downstream 231210 58502255 ~ 58502647 (+) False LOC110528980
TU714516 lncRNA downstream 295530 58566575 ~ 58567078 (+) True G628432
LOC110528978 mRNA upstream 5309 58254627 ~ 58265496 (+) False LOC110528978
XM_036983614.1 mRNA upstream 37351 58206944 ~ 58233454 (+) False LOC110528060
XM_036983615.1 mRNA upstream 37351 58206944 ~ 58233454 (+) False LOC110528060
XM_036983616.1 mRNA upstream 37351 58208028 ~ 58233454 (+) True LOC110528060
XM_036983612.1 mRNA upstream 70549 58196427 ~ 58200256 (+) True LOC110528059
LOC110527127 mRNA downstream 18380 58289425 ~ 58291045 (+) True LOC110527127
XM_036983622.1 mRNA downstream 135740 58406785 ~ 58411255 (+) False LOC110528068
XM_036983623.1 mRNA downstream 135740 58406785 ~ 58411255 (+) False LOC110528068
XM_036983624.1 mRNA downstream 135740 58406785 ~ 58411255 (+) True LOC110528068
XM_021609869.2 mRNA downstream 199067 58470112 ~ 58500215 (+) False LOC110528073
TU714108 other upstream 278933 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 674754 57579050 ~ 57596051 (+) False G627035
TU712996 other upstream 674754 57579050 ~ 57596051 (+) False G627035
TU712999 other upstream 674754 57579050 ~ 57596051 (+) True G627035
TU712997 other upstream 684961 57542882 ~ 57585844 (+) False G627035
TU714457 other downstream 232505 58503550 ~ 58504077 (+) True LOC110528980
TU714554 other downstream 437250 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 437250 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 747300 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 797625 59068670 ~ 59084729 (+) True LOC110528099

Expression Profile