RNA id: TU714537


Basic Information

Item Value
RNA id TU714537
length 229
lncRNA type intronic
GC content 0.39
exon number 2
gene id G628451
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58610111 ~ 58610368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAGAAACGTTACATACAAGCCAGAATTGTACAGCTTCTCAGGTAAAGTGTCGTTAATCATTGAGTAAACAAGAACAGGAAAAATAAGATGGGTAAGGGAGCATTCCACTTCATAAGATTGATTTCATGTGTGAGTAATCACATAGGTCATCACATATTGACTTACACTGGCTCCGTCACTACTCCATTTATACTCAGAATCCTGCCTCGCCAATTTAACACAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714455 lncRNA upstream 19764 58590098 ~ 58590347 (+) True G628371
TU714516 lncRNA upstream 43033 58566575 ~ 58567078 (+) True G628432
TU714456 lncRNA upstream 107464 58502255 ~ 58502647 (+) False LOC110528980
TU714434 lncRNA upstream 153341 58452980 ~ 58456770 (+) True G628351
TU714425 lncRNA upstream 161595 58443924 ~ 58448516 (+) True G628344
TU714543 lncRNA downstream 9599 58619967 ~ 58620226 (+) True G628457
TU714544 lncRNA downstream 12240 58622608 ~ 58623335 (+) True G628458
TU714574 lncRNA downstream 102529 58712897 ~ 58718648 (+) True G628476
TU714576 lncRNA downstream 232912 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 280760 58891128 ~ 58894932 (+) True G628566
XM_036983628.1 mRNA upstream 21110 58502199 ~ 58589001 (+) False LOC110528980
XM_036983626.1 mRNA upstream 21110 58502200 ~ 58589001 (+) False LOC110528980
XM_036983627.1 mRNA upstream 21110 58502200 ~ 58589001 (+) False LOC110528980
XM_036983629.1 mRNA upstream 21110 58502200 ~ 58589001 (+) False LOC110528980
XM_036983630.1 mRNA upstream 24831 58502198 ~ 58585280 (+) False LOC110528980
XM_036983633.1 mRNA downstream 29677 58640045 ~ 58655578 (+) False nuak2
XM_021609872.2 mRNA downstream 29682 58640050 ~ 58655578 (+) True nuak2
LOC110528982 mRNA downstream 55174 58665542 ~ 58668251 (+) True LOC110528982
XM_021609874.2 mRNA downstream 60695 58671063 ~ 58677554 (+) False LOC110528081
XM_021609878.2 mRNA downstream 60695 58671063 ~ 58677554 (+) False LOC110528081
TU714457 other upstream 106034 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 618239 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 1014060 57579050 ~ 57596051 (+) False G627035
TU714554 other downstream 97927 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 97927 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 407977 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 458302 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 1073963 59684331 ~ 59684763 (+) True G629678

Expression Profile