RNA id: TU714544


Basic Information

Item Value
RNA id TU714544
length 728
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G628458
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58622608 ~ 58623335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGTAACACGTTTTGCTTCATGCTATACTTTAGACAAGCTACTGATATTGTTGCAGTGAACAGACTTGTTATGTCATGTACTGTTAATAAATGTTAACATTATATTATTTCATtgagcatacacacacatacagttactACCTACCCTGATTTATAATGCTCTTTACTTTCCCAATGAGAATGGAGACAGACTAAACTATATAGTAGATATACTGAATAACTGAAGGTGCTTTGTACATTAAGTTATACCAGCTCCAGTACAGAGATCAGAGACTCGGGTGACTTCTATGTCATCTTTACTAAACAACATAACACAATTAACAATTGAAACAGCAGACAAAAACAAGGTTTGACTACTCCTCAAAAATGGCTTCACTcctggggcctgttgcacaaaagtagaattaagacatccgggataaatgactcagctgagctcaatgaagccaaaacatgtgcgtccaggcttaattggttgcacaaagaccaagccaggatgagcagacacggattcattaagccaggtgaaaccaatcctggataggtgcgcgctcacggctcactcaaatagaccccgccacagatcacagattaactgatttaccatggcaactagagccgcgtacttttcctcgtcggaagcacaaatcctcatggaggcatacgaggaggtaaaagatataattaagaagaaaggcaacaccgccacagtgataaagcaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714543 lncRNA upstream 2382 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 12240 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 32261 58590098 ~ 58590347 (+) True G628371
TU714516 lncRNA upstream 55530 58566575 ~ 58567078 (+) True G628432
TU714456 lncRNA upstream 119961 58502255 ~ 58502647 (+) False LOC110528980
TU714574 lncRNA downstream 89562 58712897 ~ 58718648 (+) True G628476
TU714576 lncRNA downstream 219945 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 267793 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 283092 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 295824 58919159 ~ 58920449 (+) True LOC110528092
XM_036983628.1 mRNA upstream 33607 58502199 ~ 58589001 (+) False LOC110528980
XM_036983626.1 mRNA upstream 33607 58502200 ~ 58589001 (+) False LOC110528980
XM_036983627.1 mRNA upstream 33607 58502200 ~ 58589001 (+) False LOC110528980
XM_036983629.1 mRNA upstream 33607 58502200 ~ 58589001 (+) False LOC110528980
XM_036983630.1 mRNA upstream 37328 58502198 ~ 58585280 (+) False LOC110528980
XM_036983633.1 mRNA downstream 16710 58640045 ~ 58655578 (+) False nuak2
XM_021609872.2 mRNA downstream 16715 58640050 ~ 58655578 (+) True nuak2
LOC110528982 mRNA downstream 42207 58665542 ~ 58668251 (+) True LOC110528982
XM_021609874.2 mRNA downstream 47728 58671063 ~ 58677554 (+) False LOC110528081
XM_021609878.2 mRNA downstream 47728 58671063 ~ 58677554 (+) False LOC110528081
TU714457 other upstream 118531 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 630736 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 1026557 57579050 ~ 57596051 (+) False G627035
TU714554 other downstream 84960 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 84960 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 395010 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 445335 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 1060996 59684331 ~ 59684763 (+) True G629678

Expression Profile