RNA id: TU714554


Basic Information

Item Value
RNA id TU714554
length 1478
RNA type TUCP
GC content 0.43
exon number 7
gene id G628468
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58708295 ~ 58713584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTATCTCCCCACAAAATGGTAACAGAAGACTTTTCTACAACCAGTTTTTAATTGAGAACATTACAAATAGTACAAAGGAAAAGAAAATGGAATATTGTAGAGCCAAAATTGAGATAATTGTATTCAGTACTTTGCATCTTTTTTTTCTCAAATCGATTCCAATATCCCGAATACGGGTGCCATTATTCCCATTGACAAATATTTACCAACAGGAACTGGAAGAACAGCCAAAATCCTATTGATCAACTAGACAACAAGATACATATATTAATCAACATAGAATAGATGACCATAGCCTTTTACCACCTCCAGACAAATCTTGCTGACATGGAAACATGACGTGAGCACTAGACTATTTAAAACAGGGCCTTTCCTTGACCTGGTACTTTTAGACATACAGAGACTCAAACACTCAAGTCATGCCGAAATCTTGTACACAAATCTCACAAGTCTGTTTTGGACGATACGGACTTTATATGTACCTACTTGCATTTTTATTGTCAATTTTGCCACTGGAATAAATGTTTGACTAACATCGATGTCTTATATGCTATTTTCAATGAGAAGTTGGTTCTCAAGTTCAGCCCTTTCAGTAACGTATTACACCTGCATACCCACTTATTTACAAAATACAGAGGAAATATGTACCTTGAAAGTCACAAAGAAGCAAATACTAAACATTTgattgttaaaaataaaaatgacaaaTGACCAGAGGTCATTTAAAGTCCATCACATGAAACAACTCGCTAGAGGGATGGCTGTATTTGTTCATCCATTGATTGCCGTGAATCTTCTTACTTTCTCTCAGTAGATCTGGAGCGGCTCCTTGATCGAGAGAATGATCTTGAGGGTTTATGGTTTCTGTCCCGGGACAGAgatctctccctcttcctgtctctggaGAGAGACCTGCTTCGGCTGCGGCTGAAGCTCCTCCTTCGTGGAGATCTGCGCCTGGCGGGCGGGCTACCACGACGCCCGCGATGGTCATCTCGAGGACGTCTGCTCCATGAGGGAGGAGGACCCCGGTTGCGGGTGCGTTTCTCACCATTGGACAGCTCCACTCGCACACGAGAACCACTTAGCGTCCTTCCATCAAGCTCCCTCACTGCGTCTGTTGCGTCCCTTGGATCTTCAAATTCCACAAAAGCAAAGCCTGGGGGGTTCCTTGCTACCCAGACACTGCGAAGTGGCCCATAATAGCCAAAGGACCTCTCCAGCTCTGTCTTGTTGCCATTATTTCCCAGGTTTCCCACATAGACCTTGCAGTCAAGAGGACAATCTCGGTGCATGGCTGGATCTGCCATTTCAACAGGTCTCAATTTTCAAAACAAAAATTGATACTCCGCAAACGTGAATGAGAAACGTATTGTAAAACCAACACTAATACTCGATCCGTTTGCAGTCTTCCGTCGAAACGCCTGTCTGTAGCTGCGACATGAACTGCTAGCTATAATAAAATGGAGACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714544 lncRNA upstream 84960 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 88069 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 97927 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 117948 58590098 ~ 58590347 (+) True G628371
TU714516 lncRNA upstream 141217 58566575 ~ 58567078 (+) True G628432
TU714576 lncRNA downstream 129696 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 177544 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 192843 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 205575 58919159 ~ 58920449 (+) True LOC110528092
TU715390 lncRNA downstream 208652 58922236 ~ 58922541 (+) True G629165
XM_021609874.2 mRNA upstream 30741 58671063 ~ 58677554 (+) False LOC110528081
XM_021609878.2 mRNA upstream 30741 58671063 ~ 58677554 (+) False LOC110528081
XM_021609875.2 mRNA upstream 30741 58671286 ~ 58677554 (+) False LOC110528081
XM_021609877.2 mRNA upstream 30741 58671286 ~ 58677554 (+) True LOC110528081
LOC110528982 mRNA upstream 40044 58665542 ~ 58668251 (+) True LOC110528982
XM_021609888.2 mRNA downstream 14549 58728133 ~ 58737629 (+) False LOC110528084
XM_021609883.2 mRNA downstream 14551 58728135 ~ 58736473 (+) False LOC110528084
XM_021609882.2 mRNA downstream 14553 58728137 ~ 58736473 (+) False LOC110528084
XR_002474190.2 mRNA downstream 14553 58728137 ~ 58737629 (+) False LOC110528084
XM_021609886.2 mRNA downstream 14850 58728434 ~ 58736473 (+) False LOC110528084
TU714457 other upstream 204218 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 716423 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 1112244 57579050 ~ 57596051 (+) False G627035
TU712996 other upstream 1112244 57579050 ~ 57596051 (+) False G627035
TU712999 other upstream 1112244 57579050 ~ 57596051 (+) True G627035
TU715451 other downstream 304761 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 355086 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 970747 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 971288 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 992369 59705953 ~ 59708053 (+) False LOC110528122

Expression Profile