RNA id: TU714576


Basic Information

Item Value
RNA id TU714576
length 2275
lncRNA type read_through
GC content 0.45
exon number 2
gene id G628478
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58843280 ~ 58852652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGTTCTCCATCTGGTTTTAATACTTCACTTCTGTAAGAGGGTTGAAATTGTCCAACGGAGAACTGTGCTCTTGGTTTAAATTAAGACACACTTACATACTAAGCATGAAGCACTGCCATTCTGCTCATGAGTATCAGTAAACAGAGATTTGAGGATCAACCATTGGAAGGTTTATATTCCTCAGTAAAATGGAGATTGCTTTACAGTCAGACTTCGATCAGATTTGGTCAAAGCTCCTTAATCATCACATCTGCTGTAATACATTCCAATTTGTGCCTATAAATACTAGTCTTTCttggatgcaccagagctcaattttgagtctcatagcaaagggtctgttttttgtatttttaataccaTTTCCAGACAtttataaaaaacagtttttcgctttgtcattatggggtattgtgcatagAGTGATGAGGAcctttgaataaggctgtaacttaaaatgtggaaaaagtctgaattctttccgaatgcactgtatagataCTCACATTCAGTTTCACTTAATGCCAACGTAAATATGATTTTCTCTACATTCCCCTAAACTGTGTCTGCAataagcagagcagagcagaataagAATACTGTTGCCTGGCCTCTAGACCAGAACAGACTGCGTGTCCAGCACTGAATACACTCCATTAGGGATAGATACACACCTGTAATATCTCAGACACCTGACCATGTGGTTCCTTGTCAAAGCAGCCCCTGCTGCGGTAAACTCTAACATCTGGGTCtgttggagagggggagaggggtgtctTGTGACTAGGGTCACTCATAGCGTGAGGGTGGAGGTGTTTTGGGCAGCGCTGCAGGTCCCTCTGGTGGTGAGACTCTGTAGGGTTAAATGTGAGTTGGCCTGTAGGAGGGTGATCGTTAGGGGTTTAGGGGCAGGAACATGAAGAGGAGTGATCATGAGTCGGACTCAGGGACAGTGGGGGTGACGGGGGTGGTGGGGGTTATGGGGCCGATGTTGTTCTGGTAGCCCGTCCGGTAGCAGCTGTTGGCGGACGAGGAGTTGGAGTTCTCCAGGGGTTTGGTGCCTGGGGGGACTAGGTTGGCTTGGGACGGGGGCTTGGGCAAAGGTGTCTCTCTTGGGTTCTTGCCCAGGATGAAGTGCATCTCGTCCACCTTCTCCAGGTTGGAGATGTCCTTCATCATGCCCTTGCGGTAGGAGACGGACAACTTGTTGGAGCCATCAGACATCAGGTTGAAGTGGCGGGCGATGAAGACGATGGGGAGAGGAAGCATGGCCATCACGATGAGGGAGAAGCACATGGCCAATGCCCAGGGAGGGTAGCTCTGGAAACGCTCCTGAGCctatagagagagaaacaagggaAATAAGGAGAAAAATGAAATACTCCTGGTGCTGACTTCAAACTCTGTAACAAGGCTAGTACACAAAATGTCAAGTGTCTATATGAAACTCTTCACTGTTTTCCAACAGGTTGACTGACCAGTTCCTCCACCCATGCATTGTACCCTGGCGGGCTGATGGCCATCTCAATGACAGTAGCCATAATGAGAACGATGAGACAACGGGAGACGTACTTCCACATGTAGAAATAGAAGGCATGGGGCCGGAAACCCAACATATCCTCAAGGTCCTGCATAAACCTTACACACATACAGGTGGGTTTAAAATAGGTCCAGACAAATCCTTCAGTTTACAGTATTCACATGTTCCTTGActctttctcttcaccctcttATCAAACTTTCCTCTTATATCATATGAAAACACACATTGCAATATCAGTGAGTTCACTTTTAAAAGCTACCTCACACTATGCGGCTCTCTGGGGAGACGCCATCCGGTACCTCTTGGTGCCGTAGATCCAGGCCACTGACACATTCTCTAGGATGACCGCGACAGTGAGTGGCAGACCAGCAGAATAGTTATCAAACATGATGACAAAGTAGTTCCCAGAGCGCTGGACGAAGAGCAGGCCACAGATAAAGGCTATGATTACAGCAGCACACTGAAAACAGATAAAACTACACTTTATGGAACAACGCAGACTATGAaaggacacacacagatgcatacacacacacacgctaacatgcactctacacacacatacattgtaatattgttgtattgtggtattatacagtggtataaagtacttacTGGAAGTAAAAATACATTAAAGTAccacttaagtcgttttttggggtatctgtactttactattaatacttattttacttcactacacTCCTACAgaaaataatattatttttt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714574 lncRNA upstream 124632 58712897 ~ 58718648 (+) True G628476
TU714544 lncRNA upstream 219945 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 223054 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 232912 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 252933 58590098 ~ 58590347 (+) True G628371
TU714698 lncRNA downstream 38476 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 53775 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 66507 58919159 ~ 58920449 (+) True LOC110528092
TU715390 lncRNA downstream 69584 58922236 ~ 58922541 (+) True G629165
TU715397 lncRNA downstream 80075 58932727 ~ 58933102 (+) True G629170
XM_036983640.1 mRNA upstream 1961 58835280 ~ 58841319 (+) True LOC110528089
XM_021609894.2 mRNA upstream 8977 58825054 ~ 58834303 (+) True LOC110528088
XM_021609892.2 mRNA upstream 27194 58804760 ~ 58816086 (+) False LOC110528087
XM_021609893.2 mRNA upstream 27194 58804772 ~ 58816086 (+) True LOC110528087
XM_036983638.1 mRNA upstream 43158 58737859 ~ 58800122 (+) False LOC110528086
XM_036983642.1 mRNA downstream 26281 58878933 ~ 58889711 (+) False LOC110528091
XM_021609898.2 mRNA downstream 31854 58884506 ~ 58889711 (+) True LOC110528091
XM_021609899.2 mRNA downstream 62530 58915182 ~ 58920830 (+) False LOC110528092
XM_021609900.2 mRNA downstream 73288 58925940 ~ 58932441 (+) True LOC110528093
XM_021609903.2 mRNA downstream 117074 58969726 ~ 59022859 (+) False LOC110528095
TU714554 other upstream 129696 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 129696 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 339203 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 851408 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 1247229 57579050 ~ 57596051 (+) False G627035
TU715451 other downstream 165693 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 216018 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 831679 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 832220 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 853301 59705953 ~ 59708053 (+) False LOC110528122

Expression Profile