RNA id: TU715592


Basic Information

Item Value
RNA id TU715592
length 673
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G629319
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59054581 ~ 59055253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactgggccgcagggcagtattccaacatgatgacgaccccaaacacacctccaagacgaccactgccttgctaaagaagctgagggtaaaggtgatggactggccaagcatgtctccagacctaaaccctattgagcatctgtggggcatcctcaaacggaaggtggaggagtgcaaggtctctaacatccaccagctccgtgatgtcgtcatggaggagtggaagaggactccagtggcaacctgtgaagctctggtgaactccatgcccaagagggttaaggcagtgctggaaaatgatggtggccacacaaaatattgacacttcgggcccaatttggacattttcacttaggggtgtactcacatttgttgccagcggtttagacattaacggctgtgtgttgagttattttgtggggacagcaaatttacactgttatacaagctgtacactcactactttacattgtagcaaagtgtcatttcttcagtgttgtcagatGAAAAGGTATACTCAAATAtgtacaaaaatgtgaggggtgtactcacttttgtgatagactgtatatatatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattttagaataattcaagaattgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715587 lncRNA upstream 4061 59050301 ~ 59050520 (+) True G629314
TU715437 lncRNA upstream 101803 58948450 ~ 58952778 (+) False G629201
TU715439 lncRNA upstream 101803 58948450 ~ 58952778 (+) True G629201
TU715436 lncRNA upstream 104764 58948450 ~ 58949817 (+) False G629201
TU715438 lncRNA upstream 104764 58948450 ~ 58949817 (+) False G629201
TU715630 lncRNA downstream 49150 59104403 ~ 59104626 (+) True G629355
TU715631 lncRNA downstream 50143 59105396 ~ 59105630 (+) True G629356
TU715634 lncRNA downstream 55581 59110834 ~ 59111043 (+) True G629359
TU715639 lncRNA downstream 61247 59116500 ~ 59117096 (+) True G629364
TU715640 lncRNA downstream 64704 59119957 ~ 59121000 (+) True G629365
XM_021609912.2 mRNA upstream 11723 59035073 ~ 59042858 (+) False LOC110528097
XM_021609916.2 mRNA downstream 13384 59068637 ~ 59084699 (+) False LOC110528099
XM_021609917.2 mRNA downstream 14181 59069434 ~ 59084699 (+) False LOC110528099
XM_021609921.2 mRNA downstream 214409 59269662 ~ 59293823 (+) False LOC110528104
XM_036983652.1 mRNA downstream 243789 59299042 ~ 59317047 (+) False LOC110528105
XM_036983654.1 mRNA downstream 243789 59299042 ~ 59317047 (+) False LOC110528105
TU715451 other upstream 31734 59018345 ~ 59022847 (+) True LOC110528095
TU714554 other upstream 340997 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 340997 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 550504 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 1062709 57918034 ~ 57991872 (+) False LOC110528055
TU715602 other downstream 13417 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 629078 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 629619 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 650700 59705953 ~ 59708053 (+) False LOC110528122
TU716553 other downstream 858287 59913540 ~ 59917551 (+) False G630206

Expression Profile