RNA id: TU716471


Basic Information

Item Value
RNA id TU716471
length 861
RNA type TUCP
GC content 0.56
exon number 2
gene id G630132
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59747450 ~ 59752591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaaaatcaCCTTGTATCGAAGTGTCCCGAATTGATCATTATTGAACCATCTTTgtggaacatttaaataaaataatgtacgcctaccacgctgcaccttggtctcttTCCGATGACAAAcgttacagaagatcccaccaccaatggaccaagcagcgtggtcaggaggactggacctgggaggaaatcctggagggagcaggaccctggacaagGGCTGGGGAGTATCGTCGTCCGAAGGAGGGGATAGAGGCAGTGAAAGCGGAACGGCGACGTTACGAGGAGTTGGAGcctgttccagctccccgcacttgccgtgcTACAGGGGGTATTCAGCCAGgacgcgttgtgccagctctgcactccagacctccagtgtgcctccacggCCCAGCATATCCTGCGCAGGCTCTACGCACTATGCCTCCAGTGCGCCGTCATAGCCCAGtgtgtcctgtgccagctctccacactcaccgAGCTAAAGTGAGTATCCAGCCAGGATGTGTTGTGGCAGCTCCACTCACTAGGCTgccagtacgtctcctcagtccggtgagacctgttccacgtacgaagcctccggcgacgatccccggtccggagcctctGGCGGTGGTTCCCAGttcggagcctccggcgacgatccacggtccggttcctccggcgacgattCACGGTCCGGAGTCTCCGGCGACGATTCACGGTCCGTATCCACAGAAGTGGAGGGATCAGCGTAGGGAGTGGGGGGTGATTACTATTTGGTtatgtcagggtgtgatttggggtgggcattctatgtactctatttctttgtgtttggtcgagtgtggttctcaatcagaggcagctgtctttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716453 lncRNA downstream 30297 59716862 ~ 59717153 (-) True G630114
TU716378 lncRNA downstream 32925 59713595 ~ 59714525 (-) True G630044
TU716376 lncRNA downstream 34091 59709104 ~ 59713359 (-) True G630042
TU716448 lncRNA downstream 44360 59702786 ~ 59703090 (-) True G630109
TU716438 lncRNA downstream 53939 59693306 ~ 59693511 (-) True G630101
TU716446 lncRNA upstream 40975 59793566 ~ 59797694 (-) False G630108
TU716447 lncRNA upstream 40975 59793566 ~ 59797213 (-) True G630108
TU716445 lncRNA upstream 47485 59800076 ~ 59801992 (-) True G630107
TU716602 lncRNA upstream 136282 59888873 ~ 59889181 (-) True G630245
TU717096 lncRNA upstream 237097 59989688 ~ 59989977 (-) True G630695
XM_021609948.2 mRNA downstream 18037 59726412 ~ 59729413 (-) True LOC110528124
XR_005052618.1 mRNA downstream 53329 59673423 ~ 59694121 (-) False LOC110528120
XR_005052622.1 mRNA downstream 53329 59673423 ~ 59694121 (-) True LOC110528120
XR_005052620.1 mRNA downstream 53331 59673423 ~ 59694119 (-) False LOC110528120
XR_005052621.1 mRNA downstream 53332 59673423 ~ 59694118 (-) False LOC110528120
XM_021609951.2 mRNA upstream 137847 59890438 ~ 59895213 (-) True LOC110528128
XM_036983679.1 mRNA upstream 357283 60109874 ~ 60120275 (-) False ruvbl1
XM_036983680.1 mRNA upstream 357283 60109874 ~ 60122317 (-) True ruvbl1
XM_036983683.1 mRNA upstream 530053 60282644 ~ 60294833 (-) False LOC110528140
XM_036983681.1 mRNA upstream 530053 60282644 ~ 60295290 (-) False LOC110528140
TU715243 other downstream 1033876 58707572 ~ 58713574 (-) False sfrs3
TU715244 other downstream 1033876 58707970 ~ 58713574 (-) False sfrs3
TU715238 other downstream 1033876 58708189 ~ 58713574 (-) False sfrs3
TU715237 other downstream 1033876 58708295 ~ 58713574 (-) False sfrs3
TU715241 other downstream 1033876 58708295 ~ 58713574 (-) True sfrs3
TU716577 other upstream 163388 59915979 ~ 59917551 (-) False G630227
TU716578 other upstream 163388 59915979 ~ 59917551 (-) False G630227
TU716579 other upstream 163388 59915979 ~ 59917551 (-) True G630227
TU717152 other upstream 330455 60083046 ~ 60083857 (-) True G630747
TU717562 other upstream 985904 60738495 ~ 60748099 (-) False LOC110528989

Expression Profile