RNA id: TU716905



Basic Information


Item Value
RNA id TU716905
length 2706
RNA type TUCP
GC content 0.49
exon number 3
gene id G630515
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60492277 ~ 60496429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAAGTAAGACTTACCGAAACTCTCCTATCAGCAATAGCTTGATTGATGGCCAAGGCAATACACACACGGCCTTTCTGGTCTGAGTAGAGGATTCTGGCTTGGGAGCCCACCacctacacacagagaacatTCAGAAATGGCATTGGCAGTTGTATAATACATTTCTTATTTATCTAGTATCAGGATGTTAATGATTAACATTGTGTCTTATATGTGTCCTATTAATGAATACCATCCTGTGTTTTCCGGCCTCACGGATCCAGCGGATGTTGTCGTTGTACTGCTGTCGCACACGCTCAGTCACATTGGCGCTGATCTCCTCCAGGACAGTGGCGGCGATGTCATCAGTCAGTGTCAGGTCATGAGGGTCACCGGAGGTGCAGACCCAGCGGAATGGTCCAAAGCCCAGGGAGAAGATGTCACTGCAGAGTGGTCAAGGGTTAGGGCCAAGAGTTTGACCTgatcatgtgacctgaccagaaaACTCACCCTGTCACTCACCCCATGATGTCTTGGACATAGGATGGGTAGCGGAACTCTGTCGCTccgcctccctccttctctacctccgctcctgaagaaagagagatgaacACAAACCTAGATGTTATCAAACTGGAGAGGACTGCGGACATCACTAGACATGCTGTGTTCAGTCTATTCTTCAGCATGTGTATCGGAACCTTCAAGTTACCCCTTAGCATTAGCCACATATCTTGGATCACATTACCTTACTCCCAATGCTAATATTAACCATGAGGGGGGTGATATAATATCTGACCCTGTGTCAGTGAATCAGTATGGTGGTGGTTTAACTGTAGGACTCACCTGCTCTCTGGGCCTCCAGGAGGAAGGCGTTTCCATAGTCCCAGAAGAACATCCCTGCCTCAGACAGCTTGTTGATGGCAGCTACCTGTCTACAAAGgctgggagagaggaagggaagaccACCACAGGTTAGAGAACAACCCCTCAACCTTAACCACAAACAGATCAGgggtctccaactcaatcatggtAATTCTTGATGAATAGTTGATTTGCTGAATCAGTTGTTTGATGTGTGACTGGGATGGAACCATAGATGGCAAACCCAGTAGCTCTGCAGGACCAGAGTTGGAGGAGACCCCTGAATTAGACCAACTGCCTTCAAAAAAGGTACAGCATCAAGGTCTAACCTCTCATGGACCACGGTTTTGAAGCGTGCTGGGTCTGTGGCCATGAGCTGGTTGGCCTGTTGGAGGCTGAGCTGAGCTGGGTAGTACCCTCCACTGAAGGGGTTGTGGAGGGAGGTCTGGTCTGAGCCCAGGTCCACCAGCagctctcctgtcctctcataCTCCGTCAACAGACGCTCCCTGGCAGAGAAGGAAACAAGGGATCCCAAAGGGGCACCTCATCTACCTAAACAGGATCCATGCAAAACACAATCACATATCACATTAACACACATCCCAAAGCTCTCCATCATACAAAAACGGAACAGACATCGCTACCATCACATAGGTAGATTAACAGCAGGGCGGGTGTTATTGGCCAATAACAAAGTAAACACACTGGCCTCGGCAATGACCCCCACACAGCCAGCGATGACAGCAGCCTTGGCCTGTGCCCCGCTCATGCCCCCCAGCCCCGATGTCACCAACACCCGGCCCCTCAGGTCATCAGACCCCAGATACCTCCGCCCTGCATTCAACACTGTCAgctaaaggagggagagagagagacgggaaggagaggaaagagagacagacacaatgTTAAGACAACGTCAATGTAACCAGCTCCTGGGGAAACTGGAGAGCAGAGCATGGGGAGATGATAAAGCAGCCATTGATAGCGTGACTTAGGTGGATTAATACATTGTTTTAGTTCAATTAAATAAAGTGAgctgttgtgtacagtatgtgagagTGGTGGTTACCTGGGCAACTGCATGGTCCAGGTTGTTCATGATCATGAGCATGATGGAGGCAGCTTGGCGTGTACGACAGGGGTACTGATCTATAGGGTAGGCCCTGAGGACACACGCACGCCcgtgcagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagggtgtGGTAGACCATATCATGGCATCAACAGATAAAGAGGAATACtacagatggagagatgagaggtggtGTTAGGTGATTATACTGTACATACCTCATATGTATGCGGGGACAGAAGCGGTACATGTAGATGTGTCCATACTGCCTGAGCTCCTGGGCGAATTCAGCAGCCAGGATGTTGTGGTGGGAGGGGGGAAAGTAGCGCAGGGCATTCCTCAGGGCTAGCTAGAGAGGGGGAGTAGATTAGGGGGTGAGATAGGAGTTCAGATGGGGTGGCCCTCTTCTTCTTTTGCATCCTTTTTTCCACTAACTTTCTGGTCATTTGTGTttcactccccctctctatccatgAAAGCACTCACTCTTATCTCTCTTAATCATTGACAGTGCCCTTTGCTCCCAGTCCTGGCAAACATTAGCGAAGATGATAGAAGGTTCTGAGGAGATGAACCAACACTGTCTCCTACCCTTAAGCCAAAACATTCCACTGTGCTGAGTATGTGAACCGTGCTTTATTGATCCCAATAGATTTAATAAAATTATTCACATGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU716933 lncRNA upstream 45848 60436087 ~ 60446429 (+) True G630539
TU716882 lncRNA upstream 70399 60371544 ~ 60421878 (+) True G630501
TU716921 lncRNA upstream 78161 60412539 ~ 60414116 (+) True G630528
TU716915 lncRNA upstream 94883 60395990 ~ 60397394 (+) True G630523
TU716881 lncRNA upstream 121957 60369931 ~ 60370320 (+) True G630500
TU716953 lncRNA downstream 3702 60500131 ~ 60555496 (+) False G630557
TU716954 lncRNA downstream 3702 60500131 ~ 60551398 (+) False G630557
TU716951 lncRNA downstream 57024 60553453 ~ 60555496 (+) True G630557
TU717471 lncRNA downstream 202062 60698491 ~ 60698704 (+) True G631050
TU717497 lncRNA downstream 240007 60736436 ~ 60736797 (+) True G631075
XM_021609965.2 mRNA upstream 100736 60380683 ~ 60391541 (+) False arpc4
XM_036983684.1 mRNA upstream 100736 60380683 ~ 60391541 (+) True arpc4
XM_021609963.2 mRNA upstream 136320 60338799 ~ 60355957 (+) True LOC110528142
XM_021609959.2 mRNA upstream 348211 60120427 ~ 60144066 (+) True eefsec
XM_021609958.2 mRNA upstream 382987 60107291 ~ 60109290 (+) False mustn1a
XR_005052624.1 mRNA downstream 67164 60563593 ~ 60565240 (+) True LOC118965307
XM_021611146.2 mRNA downstream 135183 60631612 ~ 60635398 (+) True LOC110528988
NM_001160544.1 mRNA downstream 700289 61196718 ~ 61200460 (+) True pob
XM_021609985.2 mRNA downstream 704458 61200887 ~ 61233404 (+) True LOC110528158
XM_036984440.1 mRNA downstream 749493 61245922 ~ 61248219 (+) True LOC118965359
TU716906 other upstream 9220 60468931 ~ 60483057 (+) True G630516
TU716696 other upstream 343896 60147817 ~ 60148381 (+) True G630327
TU716682 other upstream 382987 60107071 ~ 60109290 (+) False mustn1a
TU716683 other upstream 382987 60107071 ~ 60109290 (+) False mustn1a
TU716681 other upstream 382987 60107360 ~ 60109290 (+) True mustn1a
TU718026 other downstream 739049 61235478 ~ 61251256 (+) False G631568
TU718031 other downstream 739049 61235478 ~ 61237049 (+) True G631568
TU718347 other downstream 889603 61386032 ~ 61446747 (+) True LOC110528160
TU718637 other downstream 1194852 61691281 ~ 61691647 (+) True G632146
TU719313 other downstream 1643087 62139516 ~ 62139991 (+) True G632776

Expression Profile