RNA id: TU717471


Basic Information

Item Value
RNA id TU717471
length 214
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G631050
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60698491 ~ 60698704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaacaccaaacatgtttgcttatttttttctggacactcttctgtaaagcccagctctgtggagtgcacggcttaaagtggtcctgtggacatatactccaatctctgctgtggcgctttgcagctccttcagggttatctttggtctctttgttgcctctctgattaatgccttctttgcctggtccgtgagttttggtgggcggccctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716898 lncRNA upstream 120201 60487955 ~ 60578290 (+) False G630513
TU716953 lncRNA upstream 142995 60500131 ~ 60555496 (+) False G630557
TU716951 lncRNA upstream 142995 60553453 ~ 60555496 (+) True G630557
TU716954 lncRNA upstream 147093 60500131 ~ 60551398 (+) False G630557
TU716896 lncRNA upstream 153342 60487955 ~ 60545149 (+) False G630513
TU717497 lncRNA downstream 37732 60736436 ~ 60736797 (+) True G631075
TU717650 lncRNA downstream 127452 60826156 ~ 60826363 (+) True G631209
TU717657 lncRNA downstream 132777 60831481 ~ 60831719 (+) True G631216
TU717660 lncRNA downstream 135394 60834098 ~ 60834621 (+) True G631219
TU717693 lncRNA downstream 157067 60855771 ~ 60855995 (+) True G631252
XM_021611146.2 mRNA upstream 63093 60631612 ~ 60635398 (+) True LOC110528988
XR_005052624.1 mRNA upstream 133251 60563593 ~ 60565240 (+) True LOC118965307
XM_021609965.2 mRNA upstream 306950 60380683 ~ 60391541 (+) False arpc4
XM_036983684.1 mRNA upstream 306950 60380683 ~ 60391541 (+) True arpc4
XM_021609963.2 mRNA upstream 342534 60338799 ~ 60355957 (+) True LOC110528142
NM_001160544.1 mRNA downstream 498014 61196718 ~ 61200460 (+) True pob
XM_021609985.2 mRNA downstream 502183 61200887 ~ 61233404 (+) True LOC110528158
XM_036984440.1 mRNA downstream 547218 61245922 ~ 61248219 (+) True LOC118965359
XR_005052625.1 mRNA downstream 551389 61250093 ~ 61255427 (+) False LOC118965308
XM_021609987.2 mRNA downstream 557208 61255912 ~ 61376237 (+) True LOC110528159
TU716905 other upstream 202062 60492277 ~ 60496429 (+) True G630515
TU716906 other upstream 215434 60468931 ~ 60483057 (+) True G630516
TU716696 other upstream 550110 60147817 ~ 60148381 (+) True G630327
TU716683 other upstream 589201 60107071 ~ 60109290 (+) False mustn1a
TU718026 other downstream 536774 61235478 ~ 61251256 (+) False G631568
TU718031 other downstream 536774 61235478 ~ 61237049 (+) True G631568
TU718347 other downstream 687328 61386032 ~ 61446747 (+) True LOC110528160
TU718637 other downstream 992577 61691281 ~ 61691647 (+) True G632146
TU719313 other downstream 1440812 62139516 ~ 62139991 (+) True G632776

Expression Profile