RNA id: TU717867


Basic Information

Item Value
RNA id TU717867
length 462
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G631414
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60945121 ~ 60945582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATTCTTgatcccttctcttaacatgtatggcccaGAACTTAATCGAGCAACTGACCAATTACGCAAGGAATAGTCCTTTAGGAGTAGCCTCCAACACAGGATGTCAGCATGATTATGTATTCAATACAGTATTATCTTTTCAAATATTACAAACTTCACATTGACCTGTAATTTAAATCAAAATTACGCTAAAATGCCTGACTGCAAACATATGAATCCTCTTCAGGCAGGACCAGATGGTGTAAACAGCAGATAGATGACTGCAGGTTGTTGATGGTGGACGTCCCCTACAGCCAACGCTGTTATCCTGTGGTAGAGTTGAACAGTTAACAGCAGCCTGAAACTAACCAAAAACATGTTTTAGATTTACTTCACATTTAGGCCTGAAAACATTGGATTAATTAATATATTTTCATTAATTctagaagattatttgtttaatATGAATATTAAAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU717763 lncRNA downstream 56946 60885799 ~ 60888175 (-) True G631321
TU717694 lncRNA downstream 89342 60855431 ~ 60855779 (-) True G631253
TU717679 lncRNA downstream 97919 60847000 ~ 60847202 (-) True G631238
TU717655 lncRNA downstream 115473 60829386 ~ 60829648 (-) True G631214
TU717563 lncRNA downstream 189677 60753024 ~ 60755444 (-) True LOC110528989
TU717871 lncRNA upstream 5147 60950729 ~ 60951670 (-) True G631417
TU717916 lncRNA upstream 103407 61048989 ~ 61049236 (-) True G631462
TU718182 lncRNA upstream 189857 61135439 ~ 61135704 (-) True G631709
TU718183 lncRNA upstream 192627 61138209 ~ 61138512 (-) True G631710
TU718194 lncRNA upstream 214397 61159979 ~ 61160196 (-) True G631721
XM_021609979.2 mRNA downstream 11374 60930301 ~ 60933747 (-) True LOC110528153
XM_036983697.1 mRNA downstream 122596 60699279 ~ 60822525 (-) False LOC110528989
XM_036983695.1 mRNA downstream 122597 60699279 ~ 60822524 (-) False LOC110528989
XM_021609980.2 mRNA upstream 482 60946064 ~ 61041619 (-) False LOC110528154
XM_036983701.1 mRNA upstream 1046 60946628 ~ 60969307 (-) False LOC110528154
XM_021609981.2 mRNA upstream 1046 60946628 ~ 61041551 (-) False LOC110528154
XM_036983700.1 mRNA upstream 1046 60946628 ~ 61041574 (-) True LOC110528154
XM_036983703.1 mRNA upstream 109807 61055389 ~ 61128515 (-) False LOC110528155
TU717562 other downstream 197022 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 861264 60083046 ~ 60083857 (-) True G630747
TU716577 other downstream 1027570 59915979 ~ 59917551 (-) False G630227
TU718213 other upstream 245126 61190708 ~ 61191045 (-) True G631740
TU718160 other upstream 252425 61198007 ~ 61199438 (-) True G631687
TU718974 other upstream 745666 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 1275690 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 1275690 62221272 ~ 62222050 (-) False G632994

Expression Profile