RNA id: TU718203


Basic Information

Item Value
RNA id TU718203
length 482
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G631730
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61174521 ~ 61175002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttggatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgatacatttgatttccattgatcatttgtgtgattttgttgtcagcacattcaactatgtaaagaaaaaagtatttaataagaatatttaattcattcagatctaggatgtgttattttagttttccctttatttttttgagcagtgtatatcatcATAAACAAAAAGGCACAGGGTGAACCCAAAGTGCAAAATATAAAGTACTCAGGAAATAGTAGGagagattttttattttacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcgaagcagttcgacagatacaacgacagagttacacatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718200 lncRNA downstream 2471 61171829 ~ 61172050 (-) True G631727
TU718198 lncRNA downstream 5547 61168664 ~ 61168974 (-) True G631725
TU718194 lncRNA downstream 14325 61159979 ~ 61160196 (-) True G631721
TU718183 lncRNA downstream 36009 61138209 ~ 61138512 (-) True G631710
TU718182 lncRNA downstream 38817 61135439 ~ 61135704 (-) True G631709
TU718204 lncRNA upstream 86 61175088 ~ 61175339 (-) True G631731
TU718205 lncRNA upstream 820 61175822 ~ 61176087 (-) True G631732
TU718157 lncRNA upstream 6277 61181279 ~ 61186722 (-) True LOC110528157
TU718158 lncRNA upstream 24580 61199582 ~ 61200452 (-) True G631685
TU718214 lncRNA upstream 43551 61218553 ~ 61237064 (-) False gpx1
XR_002474204.2 mRNA downstream 9856 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 15660 61156718 ~ 61158861 (-) True LOC118965385
XM_036983704.1 mRNA downstream 46004 61055389 ~ 61128517 (-) True LOC110528155
XM_036983702.1 mRNA downstream 46005 61055389 ~ 61128516 (-) False LOC110528155
XM_036983705.1 mRNA downstream 46006 61055389 ~ 61128515 (-) False LOC110528155
XM_021609984.2 mRNA upstream 6263 61181265 ~ 61186850 (-) False LOC110528157
NM_001124525.1 mRNA upstream 60477 61235479 ~ 61236995 (-) False gpx1
XM_021609991.2 mRNA upstream 367001 61542003 ~ 61557188 (-) False LOC110528164
XM_036983708.1 mRNA upstream 459195 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA upstream 459196 61634198 ~ 61749981 (-) False LOC110528165
TU717562 other downstream 426422 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1090664 60083046 ~ 60083857 (-) True G630747
TU716577 other downstream 1256970 59915979 ~ 59917551 (-) False G630227
TU718213 other upstream 15706 61190708 ~ 61191045 (-) True G631740
TU718160 other upstream 23005 61198007 ~ 61199438 (-) True G631687
TU718974 other upstream 516246 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 1046270 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 1046270 62221272 ~ 62222050 (-) False G632994

Expression Profile