RNA id: TU718026



Basic Information


Item Value
RNA id TU718026
length 1126
RNA type TUCP
GC content 0.46
exon number 3
gene id G631568
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61235478 ~ 61251702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGGGGAAAATAATTTATTTGGCCAACTTCTTACACTTCTTGAAACACAGTCGTGCTTTACATGGGCCAAAGGCAACTGTTATGTTAAGTCTTTTACATTTCATCAGACATCCCTCTCACAAAAGGCTTGGTTTCAATGGATGCCTTCATTTAATAAAAGTTCAGAACACAGCAGCTTTTTGCATATGAGAGCACGGCACATGATGTGAAAAGGTAATGGGTGTGCTGCTGTCACACAGAAGCTAATCTTGTATGGAGGAAGTATTTGTTGAATGGGGAGCTGTTGAAAGTTGTTTATTTTTTAAGTTATGGCCAAGCACATGTCCCAAAGTGTGACAATACTTAATAATTTGAAAAGCCATTACAAGTCATTGACATGATTTCCACTCCCCACCATTGCTTCTGTGTGACCAACATGGACGGTTTAGTTAGCCGTATTGAGAAGCTCCTTGATGTCACCCTCAATGTTGCTGGTAAGGAATCTCCTGCCATAACGCTTGAATGGCTCTCCAGCTGGCCCAATGAGGAACTTCTCAAAGTTCCAGGCGATGTCAGTCCTGCAGACTGGACTCCAGATGATGCACTTGGGGTCATTCATTAAGGCCATGGGCTCGTCGCTTGGGAATGGCAGCTTATCCTTGAGGTACACAAACAGTGGGTGGGCGTCCTTCCCATTCACATCCACTTTCTCAAGGAGCTGGAACTTAGGCTCAAAGCCATTTCCCGGACGGACATACTTTAAGGACATCAGGATCTCTTCGTTCTTGCAGTTCTCCTGCAGGAGTAGATGGGAAGAATATGTAACCTGATGTCCGAACTGATTGCAGGGCACCCCCAGAATCACTAGCCCCTTGTCGGCGTACCGTTCATGGAGCTCGTTCATCTGGGTGTAATCCCTGGTGGTCGTGCCTCAGAGAGACGCCACATTCTCGATCAGCACCACTTTACCCTGAAGAGACGAGAAATTAAACAATTCTCCTGTAAGGAGCTTTGCTGTCAGGTCGTAGAACATCTTACATACAGCCATTTGCCTGGTAAATGTCACTCCCCGCTTCTTGCGTACTCTGTGTGATTTATAATGGGACATTTACCCATTTCTGTGTCCAGGTGAAGAGTGAGAAGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU718040 lncRNA upstream 45676 61189385 ~ 61189802 (+) True G631575
TU718038 lncRNA upstream 46809 61188308 ~ 61188669 (+) True G631573
TU718037 lncRNA upstream 47589 61187635 ~ 61187889 (+) True G631572
TU718017 lncRNA upstream 70287 61164935 ~ 61165191 (+) True G631559
TU718015 lncRNA upstream 72403 61162544 ~ 61163075 (+) True G631557
TU718067 lncRNA downstream 129874 61381130 ~ 61381796 (+) True G631599
TU718477 lncRNA downstream 259080 61510336 ~ 61512131 (+) True G631997
TU718508 lncRNA downstream 276480 61527736 ~ 61528197 (+) True G632027
TU718495 lncRNA downstream 278579 61529835 ~ 61611282 (+) True G632014
TU718568 lncRNA downstream 361818 61613074 ~ 61613299 (+) True G632082
XM_021609985.2 mRNA upstream 2074 61200887 ~ 61233404 (+) True LOC110528158
NM_001160544.1 mRNA upstream 35018 61196718 ~ 61200460 (+) True pob
XM_021611146.2 mRNA upstream 600080 60631612 ~ 60635398 (+) True LOC110528988
XR_005052624.1 mRNA upstream 670238 60563593 ~ 60565240 (+) True LOC118965307
XM_021609965.2 mRNA upstream 843937 60380683 ~ 60391541 (+) False arpc4
XM_021609987.2 mRNA downstream 4656 61255912 ~ 61376237 (+) True LOC110528159
XM_021609988.2 mRNA downstream 134312 61385568 ~ 61470736 (+) False LOC110528160
XM_036983706.1 mRNA downstream 236677 61487933 ~ 61514684 (+) False parp3
XM_036983707.1 mRNA downstream 236870 61488126 ~ 61514684 (+) True parp3
XM_021609989.2 mRNA downstream 264100 61515356 ~ 61520408 (+) True LOC110528161
TU716905 other upstream 739049 60492277 ~ 60496429 (+) True G630515
TU716906 other upstream 752421 60468931 ~ 60483057 (+) True G630516
TU716696 other upstream 1087097 60147817 ~ 60148381 (+) True G630327
TU716682 other upstream 1126188 60107071 ~ 60109290 (+) False mustn1a
TU718347 other downstream 134776 61386032 ~ 61446747 (+) True LOC110528160
TU718637 other downstream 440025 61691281 ~ 61691647 (+) True G632146
TU719313 other downstream 888260 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 979259 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 994664 62245920 ~ 62329061 (+) True G632817

Expression Profile