RNA id: TU718339


Basic Information

Item Value
RNA id TU718339
length 3556
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G631863
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61374720 ~ 61378603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tAAGAAACGGTAGGCgcaggatcacagtacacttgaaaaaACAACAACCACTAAGTGTCAAACTCACTCAGGAAACGAACCCACAAggtaaacaattcaagcttctgcaaagaGAAATAGAAAAAACACCTCTTTTAAAGTGAAAATCATAATGAGTAATGGAACACACCTGAGTGTCATAATTGTCTCTAGGGTGGTCTCTCTGCagccctctggtgacaggtggaaccatgaaACAGAGGATGAGTTTTCAGCGCTGTGGCGTGAGCAATAGGGATAGAAGAAAATAATTTCACTGTCTGAATACTACAGGAGTTTACCACATAACATGCATACAGTATTGCTTGTCTGTATAGATACAGAAAAAAGAAAATTGCATATGATCTTTTATTGCAGACAGAAAAACACCCATGGCATTGTACATTATCTCCATCACTCAAAGCCCAAGACGAGAGACCAAACAGAATAACATGTGACAACAGCAAATGGAGTGAGCCCAATGTCTAGATCATAGGATTATCATGCTATAAAGGATATTGTTATACCTAAAATAAGTGAAGAACTCAGTATATCCCTGTCAAAAAGTCAAAAAGTAAAGATTATATTGGTACACATGACAGACCAGAGTAGTTGAACAAGTTTCTACACCGGAAAAACCTAGGCCAAAGTAATAGAACAGATCTGATCATGATCATGATATGTAGGTAGATAAAATTACAAATCCTTCACAACTAAATGCATACAATTCCTTCATTTAATGGTTGTTCATCTTAATCGAGTGGTCACCAatcttttctgagtcaagatcactttcgcagTCAAAAAGAAAGCAGCAAACTACCGCTCAGATTTCTTTttaaacatgacttaaaaaatgtaacgttaacctaataaaaacagttctgtaggaatgaggtttgtgcagtaggcctaATACAGTGAACTGCcaatattgttcttctcagaccatacagtggcttgtgaaagtattcaccccccttggcatttttcctattttgttgccttacaacctggaattaaaatagatttttgtgggggtttgtatcatttgatttacacaacatgcctaccactttgaagatgcaaaatattttttattgtgaaacaaacaagaaataagataaGAAACCAGAAAAcatgagcgtgcataactatcccCCCTgtatttagcgccatccatcattccttcaattctgaccagtttcccagtccctgccgatgaaaaacatccccacagcatgatgctgccaccaccatgcttcactttggggatggtgttctcagggtgatgagaggtgttgggtttgtgccagacatattgtttttcttgatggccaaaaagcttaattttagtctcatctgaccagagtaccttcttctatatgtttggggagtctcccacatgccttttggcgaacatcaAATTGTTTgctttttttctttaagcaatggctttttttctggccactcttccattaagcccggctctgtggagtgtacggcttaaagtggacagatactcccatctccgctgtggagttttgcagctccttcagggttatctctGGTTTCTTTGTTGCCTCCCtcattaatgccctccttgcctggtccgtgagttttggtgggcggccctctcttggcaggtttgttgtggtgccatattctttcaattttttaatcatggatttaatggtgctctgtgggatgttcaaagtttctgatatttttttataacccaaccctgatctgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgccacttgcttggtggtgtgccttgcttagtggtgttgcagattctggagcctttcagaacagttgtatatatactgagattatgtgacagattatgtgacacttaaataaagtccacctgtgtgcaatctaactaattatgtgacttctaaaggtaattggttgcaccagatcttatttaggggcttcatagcaaagggggtgaatacatatacacacaccacttttcagtttatttattttttgaaacaagtcattttttaaatttaatttcacaaatttggaatattttgtatatgtccattacatgaaatcggGAAACGGGAAAacgtcttccacctgatggcaaAAGTCGAGTCACACtgcatctgcctcatgcacaaactcatgttgttcctatgaccaggGAAAGTGAAATACTCCTCCATATTAAAATAGACATGATGAGCTGCTGATAATAATAAAAACACAGGGCTATCGATAcacttggctactcattcattgcagctgcattGAGAATGGAAGCAGGGAGAAgcgttgaataaaaacagtgttgacagtgctgaatacaaACTTGGACATGACCTCACACATAAAAACATCAGCTATTTGCTGTATTATTTGACAGTCTCTCTATGGTCAttgttttaaattatatgaaaTCTCATGTAGGCTAGTATAAAACTACTGTGGCCGGGGTCCTGGAAGCTGTAGGTACAtgatttgagctatccgattggtcagtcagtaagcagttagtCTTTTCAGACAAATTAAATGGTTAAAAATGGGAACACTTCTCCTCCCCGGCacacagggcttctgaatcaagtgtacctactgtaccaccaacagcataacacacacacaaaaaggagTGGCGGCCTTTGTCATAGCCTTTATCGTTGGCTTTTCAGTTAGGTGATCAACTAGGAATGCATCGATCGAGCGATTGGTGACCACTGTCTAAAACTATACTGTATTCgattaaatacagtatattcaattatttatatttatatataaacaaATTATCTTACATCAAATGATTAAACATATTGGACACAATGTTATTAACATTTAAATACTTCAATCAAAAGACATTTTGACTTTCATCAGTCCCACAAGTATATTGTAACAATATTTTTGTCCCCTCAAAGAATGTATCACTTTCTACTGGTGAATGTATCATCTCCTACAACAGTTCTGTTTAATGTTGATCAACCcatctttgttttgtcattatcaCTCACAGACATTACAGTTTAACATACAGGAAAGTTCAAAAGGTCCAGAAATAGATGTCATGTCTGTCATGATAAATAGTATGGCTACAGATCCACCAACAAGTTGACATAAAAGACAAGATTAGCTGAAGAAATCTCACTCCCACCTTAAAAGGATCAAACCCGAGGAGTTTGCTCCATCCATCCCCTTCTACTCCTCTCCATCCCCTACGGGCTCCCTCTCCTCAGCTACAGCCTCTACTGGGGCTTCCCTTGATCCTTCCTTCACTGTGGggccttcctcctccctccccaactctctctccagctcctccaccatcTCTTCCACCAAGTCCAGTTCCTCAAAGGAAGAGCCGCTGCCCACTGACTCGCTGGAGCCCCTGTCCCCATGCCCCTTTTCACTTGGCTCCCTGTGGGCCAGAGACGTCTCTGTGCTCTTTGACTGCGCCTGGCTGCTCAGCTTGCTGCTGACATCACTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718214 lncRNA downstream 137656 61218553 ~ 61237064 (-) False gpx1
TU718215 lncRNA downstream 137656 61235323 ~ 61237064 (-) True gpx1
TU718217 lncRNA downstream 149914 61223581 ~ 61224806 (-) True G631743
TU718158 lncRNA downstream 174268 61199582 ~ 61200452 (-) True G631685
TU718157 lncRNA downstream 187998 61181279 ~ 61186722 (-) True LOC110528157
TU718340 lncRNA upstream 485 61379088 ~ 61379392 (-) True G631864
TU718342 lncRNA upstream 2767 61381370 ~ 61381669 (-) True G631866
TU718343 lncRNA upstream 3289 61381892 ~ 61382105 (-) True G631867
TU718344 lncRNA upstream 4470 61383073 ~ 61383394 (-) True G631868
TU718455 lncRNA upstream 72984 61451587 ~ 61452632 (-) True G631978
NM_001124525.1 mRNA downstream 137725 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 187870 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 210055 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 215859 61156718 ~ 61158861 (-) True LOC118965385
XM_036983704.1 mRNA downstream 246203 61055389 ~ 61128517 (-) True LOC110528155
XM_021609991.2 mRNA upstream 163400 61542003 ~ 61557188 (-) False LOC110528164
XM_036983708.1 mRNA upstream 255594 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA upstream 255595 61634198 ~ 61749981 (-) False LOC110528165
XR_005052626.1 mRNA upstream 256244 61634847 ~ 61749981 (-) True LOC110528165
XM_036983709.1 mRNA upstream 422075 61800678 ~ 61921139 (-) False LOC110528991
TU718160 other downstream 175282 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 183675 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 626621 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1290863 60083046 ~ 60083857 (-) True G630747
TU716579 other downstream 1457169 59915979 ~ 59917551 (-) True G630227
TU718974 other upstream 312645 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 842669 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 842669 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 1129616 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1628172 63006775 ~ 63008040 (-) True si:dkey-28n18.9

Expression Profile