RNA id: TU718941


Basic Information

Item Value
RNA id TU718941
length 884
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G632427
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61632680 ~ 61633563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacaactgcgacctggccaagataaagcaaagcagtgtgacacaaacaacacagagttacacatggattaaacaaaggtacagtcaataacacaatagaaaagtctatatacagcgtgtgcaaattaagtaagattagggaggtaaggcaataaatgggccatagtggtgaaataattacaatttagcaattaaacactggagtgatagatgtgcataagatgaatgtacaagtagagatactggggtgcaaaggagcaaataaataaataacaatatggggatgaggtagttgggtgggctatttatagatgggctatgtacaggtgcaatgatctgtaagctgctctgacagctgatgcttaaagttagtgagggagatatgagtttccagcttcagtgatttttgccatttgttccagtcattggcatcagagaactgtaaggaaaggcagccaaaggaggagtttGCTTTGGCGGTGACCAGTGAAATGGATGTGGAGGTCCAGCTCGCGTGGTTACTCGTTggctgcggttgtgaggccaaatactccaaaacaacattggaggcttatggttgagaaattaacattaaattatctggcaacagctctggtggacattcctgcagccagcatgccaattgcacactccctcaatttgagacatctgtggtgttgtgggacaaaactgcacattttagattgtccttttattgtcccccagcacaaggtgcaactgtgtaataatgatcatgctttttaatttGTTTCTTGATATttcacaactgtcaggtggatggattatcttggcaaatgagaaatgctcactaacagagatgtaaacaaatttgtgcaccacattttagagaaatacacgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718937 lncRNA downstream 8339 61624037 ~ 61624341 (-) True G632423
TU718877 lncRNA downstream 75513 61556382 ~ 61557167 (-) True LOC110528164
TU718867 lncRNA downstream 104651 61527756 ~ 61528029 (-) True G632356
TU718849 lncRNA downstream 140549 61488767 ~ 61492131 (-) True G632340
TU718455 lncRNA downstream 180048 61451587 ~ 61452632 (-) True G631978
TU718965 lncRNA upstream 24861 61658424 ~ 61658686 (-) True G632450
TU718968 lncRNA upstream 28256 61661819 ~ 61662023 (-) True G632453
TU718975 lncRNA upstream 59253 61692816 ~ 61693145 (-) True G632460
TU718991 lncRNA upstream 82978 61716541 ~ 61716883 (-) True G632475
TU718994 lncRNA upstream 83801 61717364 ~ 61717745 (-) False G632476
XM_021609991.2 mRNA downstream 75492 61542003 ~ 61557188 (-) False LOC110528164
NM_001124525.1 mRNA downstream 395685 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 445830 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 468015 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 473819 61156718 ~ 61158861 (-) True LOC118965385
XM_036983708.1 mRNA upstream 634 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA upstream 635 61634198 ~ 61749981 (-) False LOC110528165
XR_005052626.1 mRNA upstream 1284 61634847 ~ 61749981 (-) True LOC110528165
XM_036983709.1 mRNA upstream 167115 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA upstream 167115 61800678 ~ 61921139 (-) False LOC110528991
TU718160 other downstream 433242 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 441635 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 884581 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1548823 60083046 ~ 60083857 (-) True G630747
TU716579 other downstream 1715129 59915979 ~ 59917551 (-) True G630227
TU718974 other upstream 57685 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 587709 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 587709 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 874656 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1373212 63006775 ~ 63008040 (-) True si:dkey-28n18.9

Expression Profile