RNA id: TU718974


Basic Information

Item Value
RNA id TU718974
length 397
RNA type TUCP
GC content 0.53
exon number 1
gene id G632459
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61691248 ~ 61691644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagcccttggttcaccccagacctgactgccctcgaccagcacaaaaacatcctgtggcggactgcaatagcatcgaatagtccccgtgatatgcaactgttcagggaagtccggaaccaatacatgcagtcagtcaggaaagttaaggccagcttcttcaggcagaagtttgcatcctgtagctccaactccaaaaagttctgggacactgtgaagtcaatggagaacaagagcacctcctcccagctgcccactgcactgaggctaggtaacacggtcaccaccgataaatccatgattatcgaaaacttcaataagcatttctcaacggctggccatgccttccgcctggctacttcaacctcggccaacagccccgccccccccgctgctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718968 lncRNA downstream 29225 61661819 ~ 61662023 (-) True G632453
TU718965 lncRNA downstream 32562 61658424 ~ 61658686 (-) True G632450
TU718941 lncRNA downstream 57685 61632680 ~ 61633563 (-) True G632427
TU718937 lncRNA downstream 66907 61624037 ~ 61624341 (-) True G632423
TU718877 lncRNA downstream 134081 61556382 ~ 61557167 (-) True LOC110528164
TU718975 lncRNA upstream 1172 61692816 ~ 61693145 (-) True G632460
TU718991 lncRNA upstream 24897 61716541 ~ 61716883 (-) True G632475
TU718994 lncRNA upstream 25720 61717364 ~ 61717745 (-) False G632476
TU718992 lncRNA upstream 25829 61717473 ~ 61717745 (-) False G632476
TU718993 lncRNA upstream 25829 61717473 ~ 61717841 (-) True G632476
XM_021609991.2 mRNA downstream 134060 61542003 ~ 61557188 (-) False LOC110528164
NM_001124525.1 mRNA downstream 454253 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 504398 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 526583 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 532387 61156718 ~ 61158861 (-) True LOC118965385
XM_036983709.1 mRNA upstream 109034 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA upstream 109034 61800678 ~ 61921139 (-) False LOC110528991
XM_036983711.1 mRNA upstream 468331 62159975 ~ 62174455 (-) False LOC110528169
XM_021609996.2 mRNA upstream 468331 62159975 ~ 62175488 (-) False LOC110528169
XM_021609997.2 mRNA upstream 468331 62159975 ~ 62175491 (-) True LOC110528169
TU718160 other downstream 491810 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 500203 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 943149 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1607391 60083046 ~ 60083857 (-) True G630747
TU716578 other downstream 1773697 59915979 ~ 59917551 (-) False G630227
TU719566 other upstream 529628 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 529628 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 816575 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1315131 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 2094128 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile