RNA id: TU718993


Basic Information

Item Value
RNA id TU718993
length 369
lncRNA type intronic
GC content 0.40
exon number 1
gene id G632476
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61717364 ~ 61717841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaagttattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagttgcttggggtatgcctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcaattggattcaggtctggactttgacttggccattctaacacctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718991 lncRNA downstream 590 61716541 ~ 61716883 (-) True G632475
TU718975 lncRNA downstream 24328 61692816 ~ 61693145 (-) True G632460
TU718968 lncRNA downstream 55450 61661819 ~ 61662023 (-) True G632453
TU718965 lncRNA downstream 58787 61658424 ~ 61658686 (-) True G632450
TU718941 lncRNA downstream 83910 61632680 ~ 61633563 (-) True G632427
TU719001 lncRNA upstream 25469 61743310 ~ 61758965 (-) True G632483
TU719003 lncRNA upstream 82837 61800678 ~ 61803767 (-) True LOC110528991
TU719066 lncRNA upstream 128761 61846602 ~ 61847677 (-) True G632544
TU719161 lncRNA upstream 259885 61977726 ~ 61979080 (-) True G632638
TU719208 lncRNA upstream 297501 62015342 ~ 62015725 (-) True G632683
XM_021609991.2 mRNA downstream 160285 61542003 ~ 61557188 (-) False LOC110528164
NM_001124525.1 mRNA downstream 480478 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 530623 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 552808 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 558612 61156718 ~ 61158861 (-) True LOC118965385
XM_036983709.1 mRNA upstream 82837 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA upstream 82837 61800678 ~ 61921139 (-) False LOC110528991
XM_036983711.1 mRNA upstream 442134 62159975 ~ 62174455 (-) False LOC110528169
XM_021609996.2 mRNA upstream 442134 62159975 ~ 62175488 (-) False LOC110528169
XM_021609997.2 mRNA upstream 442134 62159975 ~ 62175491 (-) True LOC110528169
TU718974 other downstream 25829 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 518035 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 526428 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 969374 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1633616 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 503431 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 503431 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 790378 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1288934 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 2067931 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile