RNA id: TU719247



Basic Information


Item Value
RNA id TU719247
length 332
lncRNA type intronic
GC content 0.36
exon number 2
gene id G632715
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62041810 ~ 62044565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcatatggttgcactcagaagacattaatttactcaataaattatccttttgttcgataaagtctctttatatccaaaaacctctgttttgttcacacgttttcttcagtaatccacaggctcaaacgcagtcaaaacaggcagacaaaaaatccaaattgtatccgtaaagttcatagaaacatgtcaaacgataatatttcaaccggacaataacgtcgtcaatataaaagataAACAAGAAAGACACTCTCTCAGTCACGTGCATGatggtgtggctgttgaacaagttgaggagactaaattacttggcgttaccttagattgtaaac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU719214 lncRNA upstream 20572 62020962 ~ 62021238 (+) True G632689
TU719212 lncRNA upstream 22912 62018609 ~ 62018898 (+) True G632687
TU718783 lncRNA upstream 53152 61978087 ~ 61988658 (+) True G632277
TU718676 lncRNA upstream 282861 61743164 ~ 61758949 (+) True G632183
TU718667 lncRNA upstream 306861 61733583 ~ 61734949 (+) True G632174
TU719238 lncRNA downstream 7396 62051961 ~ 62053401 (+) True G632706
TU719257 lncRNA downstream 9237 62053802 ~ 62055232 (+) True G632724
TU719288 lncRNA downstream 50522 62095087 ~ 62099261 (+) False G632752
TU719287 lncRNA downstream 51192 62095757 ~ 62098718 (+) True G632752
TU719295 lncRNA downstream 62777 62107342 ~ 62108474 (+) True G632758
XM_021609994.2 mRNA upstream 28475 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 45512 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 334484 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 502091 61533947 ~ 61539719 (+) True LOC110528162
XM_021609989.2 mRNA upstream 521402 61515356 ~ 61520408 (+) True LOC110528161
XM_036983712.1 mRNA downstream 150090 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 150090 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 150096 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 160606 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 187156 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 350163 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 595063 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 790554 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 804761 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1545381 60492277 ~ 60496429 (+) True G630515
TU719313 other downstream 94951 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 185950 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 201355 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 295456 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 884833 62929398 ~ 62929699 (+) True G633613

Expression Profile


TU719247 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

TU719247 Expression in each Bioproject

Bar chart with 19 bars.
TU719247 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.