RNA id: TU719257



Basic Information


Item Value
RNA id TU719257
length 883
lncRNA type intronic
GC content 0.43
exon number 2
gene id G632724
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62053802 ~ 62055232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAACATCTGTACAATTAAAAAACAAGGTGACCTGCGAAAGCCAGATGGACATGTGTACATTACTGTAACATAGGCTATTCTGCATCAAACgtaggcctacctgtcacaaTAAAAACagttaccatgatgagatgacaggtctacatgcattgtgaagtgtgctccatactgagatgggctgtctgtccacACCCTGAGAGTTGATTCATCATGCAGCGACCGtagagaagccagatttagacTTCAAatataatttaacagttccatttcgcGCCATGCTGTTCATATAATGTATTACAATTTGAGTGGTTTTGTGCGGTAAATCCCAGAAACTGGTTTCTCGCCATTCagccctaatacacacacacacacactgaccaaccaCCTTATAATACAGAGAGTGTATTCTAAGACTGCCTAAATACCTTACAGTATGTAGGGGCTCCTATCTGCTATTCACATACTGTGGGTAGAAGCATTATGTACTGCAGGTAAGTTCCAATGGTGACATAAGAAGGTGAGAGGTAAAACATGAGAAGATGTGAACATGGCTGCTGTATTGCATGCTGCTGCAGCCCCTCGTTCATTATTTGCAGAAGTCCAGTCAACCTGGCAGTAATGTAGGCCTAATCATCAACCAAAGACAGACATGGAGGTTGAGTAAaacagaagaataggagaaaAATAGGAGATGGAACCTGAAGCAGGTGACTGTAACGagcacagagggtgactgtaactagcacaaaggtagactgtaactagcacagagggtgactgtaactagcacagagggtgactgtaactagcacagatggtgactgtaactagcacaaaggtagactgtaactagcacagagggtgactgtaactagcacagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719238 lncRNA upstream 401 62051961 ~ 62053401 (+) True G632706
TU719247 lncRNA upstream 9237 62041810 ~ 62044565 (+) True G632715
TU719214 lncRNA upstream 32564 62020962 ~ 62021238 (+) True G632689
TU719212 lncRNA upstream 34904 62018609 ~ 62018898 (+) True G632687
TU718783 lncRNA upstream 65144 61978087 ~ 61988658 (+) True G632277
TU719288 lncRNA downstream 39855 62095087 ~ 62099261 (+) False G632752
TU719287 lncRNA downstream 40525 62095757 ~ 62098718 (+) True G632752
TU719295 lncRNA downstream 52110 62107342 ~ 62108474 (+) True G632758
TU719340 lncRNA downstream 122308 62177540 ~ 62177761 (+) True G632796
TU719323 lncRNA downstream 163263 62218495 ~ 62218746 (+) False G632780
XM_021609994.2 mRNA upstream 40467 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 57504 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 346476 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 514083 61533947 ~ 61539719 (+) True LOC110528162
XM_021609989.2 mRNA upstream 533394 61515356 ~ 61520408 (+) True LOC110528161
XM_036983712.1 mRNA downstream 139423 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 139423 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 139429 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 149939 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 176489 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 362155 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 607055 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 802546 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 816753 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1557373 60492277 ~ 60496429 (+) True G630515
TU719313 other downstream 84284 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 175283 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 190688 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 284789 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 874166 62929398 ~ 62929699 (+) True G633613

Expression Profile