RNA id: TU719288


Basic Information

Item Value
RNA id TU719288
length 2369
lncRNA type intronic
GC content 0.44
exon number 3
gene id G632752
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62095087 ~ 62099261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatcaagatgtgaataatatcaagatgtgaataataacaagatgtgaataatatcaatatgtgaataatatccagatgtgaataatatcaagatGTGAATAATAACAAGATGTGAATAACAACAAGATGTACATAATATCAATGTGTAAATAatatcagatgtgaataatatcagatgtgaataatatcaatgTGTGAATAATATCAATGTGTGAATAatatcagatgtgaataatatcagatgtgaataatatcaagatgtgaataatatcaagatttgttcttttttttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcaataatacagtagaaaaaaggagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcgaaaaattacaattttgcagattaacactggagtgataaatgatcagatggtcatgtacaggtagagatattggtgtgcaaaagagcataaaataaaataaataaaaacagtatggggatgaggtaggtaacaatgggtgggctatttaccgatagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccagtcacaggcagcagagaactggaacgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgagtgctacggatgggtgttgccatcgtgaccagtgaactgagataaggcggagctttatctagcatggacttgtacatgacctggagccagtgggtctggcgatgaatatgtagcgagggccagccgactagagcatacaggtcgcagtggtgggtggtataaggtgctttagtgacaaaacgggtggcactgtgataaactgcatccagtttgctgagtagagtgttggaagcaattttgtagatgacatcgccgaagtcgaggatcggtaggatagtcagttttactagggtaagtttggcggcgtgagtgaaggaggctttgttgcggaatagaaagctgactctagatttgattttcgattggagatgtttgatatgagtctggaaggagagtttacagtctacccagacacctaggtacttatagatgtccacatattcaaggtcggaaccatccagggtggtgatgctagtcaggcgtgcgggtgcaggcagcgaacggttgaaaagcatgcatttggttttactagcgtttaagagcagttggtaggccacggaaggagtgttgtatggcattgaagctcgtttggaggttagatagcacagtgtccaaggacgggccggaagtatatagaatggtgtcgtctgcgtagaggtggatcagggaatcgcccgcagcaagagaaacatcattgatatctacagagaaaagagtcggcccgagaattgaaccctgtggcacccccatagaaacagccagaggaccggacagcatgccctccgatttgacacactgaactctgtctgcaaagtagttggtgaaccaggcaaggcagtcatcagaataaccgaggctactgagtctgccgataagaatatggtgattgacatagtcgaaagccttggcaatgtcgatgaagacggctgcacagtactgtcttttatcgatggcggttatgatatcgtttagtaccttgagtgtggctgaggtgcacccgtgaccggctcggaaaccagattgcacagcggaggaggtacggtgggattcgagatggtcagtgacctgtttgttgacttggctttcgaagaccttagataggcagggcaggatggatataggtctgtaacagttttggtccagggtgtctccccctttgaagagggggatgactgcggcagctttccagtccttggggatctcagacgatataaaagagaggttgaacaggctggtaataggagttgcgacaatggcggcggatagtttcagaaatagagggtccagattgtcaagcccagctgatttgtacgggtccaggttttgcagctctttcagaacatctgctatctggatttgggtaaaggagaacctggggaggcttgggcgagtagctgcgggggggggcggagctgttggccgaggttggagtagccaggcggaaggtgTGAATAATAACAAGATGTGAATATTAACAAGATGTAAATCATATCAATGTGTGAATAATATCAGATGTGGATAatatcagatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719257 lncRNA upstream 39855 62053802 ~ 62055232 (+) True G632724
TU719238 lncRNA upstream 41686 62051961 ~ 62053401 (+) True G632706
TU719247 lncRNA upstream 50522 62041810 ~ 62044565 (+) True G632715
TU719214 lncRNA upstream 73849 62020962 ~ 62021238 (+) True G632689
TU719212 lncRNA upstream 76189 62018609 ~ 62018898 (+) True G632687
TU719295 lncRNA downstream 8081 62107342 ~ 62108474 (+) True G632758
TU719340 lncRNA downstream 78279 62177540 ~ 62177761 (+) True G632796
TU719323 lncRNA downstream 119234 62218495 ~ 62218746 (+) False G632780
TU719324 lncRNA downstream 119234 62218495 ~ 62218697 (+) True G632780
TU719316 lncRNA downstream 124484 62223745 ~ 62228008 (+) False LOC110528171
XM_021609994.2 mRNA upstream 81752 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 98789 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 387761 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 555368 61533947 ~ 61539719 (+) True LOC110528162
XM_021609989.2 mRNA upstream 574679 61515356 ~ 61520408 (+) True LOC110528161
XM_036983712.1 mRNA downstream 95394 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 95394 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 95400 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 105910 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 132460 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 403440 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 648340 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 843831 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 858038 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1598658 60492277 ~ 60496429 (+) True G630515
TU719313 other downstream 40255 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 131254 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 146659 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 240760 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 830137 62929398 ~ 62929699 (+) True G633613

Expression Profile