RNA id: TU719295



Basic Information


Item Value
RNA id TU719295
length 1087
lncRNA type intronic
GC content 0.44
exon number 2
gene id G632758
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62107342 ~ 62108474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcaaaacactgtTGACTACCCGTTCTAGCATAAGCCATTTGCAGTCTGTTGTCATACTTGACTTTAAACGATCAAAGTCTGCTCCGGTGAGTCCAAAAACACAAACACCTGTCGCCtaaacgacataacctgtttcagagccggatGTTTGCAACCCAACTAATTAAACTTGCAAACTTCCCAAACCACAATAACTCACGCTCTAATAGCTCATTGGGAATAAACAGCCGTATATTCGAAATCGTTACCCTTGTTGACGTAGAAAAAAGCGTCTTTACTCGAATAAACATacctttaagaagtacgccatgctcaaccatctgatCGATAAGACGCTCTACTTTAAGAAAAAACACCACAGCTTTATTCATCCACTACACATAAGCAACATTTTCATAGCCCACCTTCTCTCCTACGGCGACCAGAATCTCCTCCACAgtgacagtagcttcagtaacacacctgAAGCCATACCAAAGTGACAGGGACGGCGTCCCCATGTGGGTCACCATCCCCACCAAAACCAGGACAATTCCAACAAGAAATACAATATACCTAAATCTaccaacaaataaaaaataaataacttaaTCATGCATAGAAAGGAAAACCACCAAGAAAAGGAAACAAAGAAGAAAACACAGGTGATCTAACTCTACTCACACTCACTCatacaattcccagcatgcaccaaacactcccagcatgcagagacagagagagagagagagagagagagagagagagttccctcTACAGACAAGATCAGGTGGTGAAATGAGCGAGCGGGGCCATGATAAAGCGCAGTGCAACTGAATTCTTACTCTCTGTGGCCCAGGAGACAGGCCCATAAAAAAGAGAAATAGAAAACATCCCATCCTATAGCAGGCTTTATAGAGCAATACAATCCTATTATATTTATTATCCCCTCCAGTACTGATAACCTGCCCTGGTGGGGAATGGAGGGTAGCTCTCCTCACTGAGTTCTCTCTTGCTGTTTTtcctcttttcatgcctcctttCTCTATGAAGCAGGGCTAAGCTTGATGAAGCAGAGTGAGAACTGGGCTAACTATCTGGGCTGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719288 lncRNA upstream 8081 62095087 ~ 62099261 (+) False G632752
TU719287 lncRNA upstream 8624 62095757 ~ 62098718 (+) True G632752
TU719257 lncRNA upstream 52110 62053802 ~ 62055232 (+) True G632724
TU719238 lncRNA upstream 53941 62051961 ~ 62053401 (+) True G632706
TU719247 lncRNA upstream 62777 62041810 ~ 62044565 (+) True G632715
TU719340 lncRNA downstream 69066 62177540 ~ 62177761 (+) True G632796
TU719323 lncRNA downstream 110021 62218495 ~ 62218746 (+) False G632780
TU719324 lncRNA downstream 110021 62218495 ~ 62218697 (+) True G632780
TU719316 lncRNA downstream 115271 62223745 ~ 62228008 (+) False LOC110528171
TU719317 lncRNA downstream 115271 62223745 ~ 62228008 (+) False LOC110528171
XM_021609994.2 mRNA upstream 94007 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 111044 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 400016 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 567623 61533947 ~ 61539719 (+) True LOC110528162
XM_021609989.2 mRNA upstream 586934 61515356 ~ 61520408 (+) True LOC110528161
XM_036983712.1 mRNA downstream 86181 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 86181 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 86187 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 96697 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 123247 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 415695 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 660595 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 856086 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 870293 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1610913 60492277 ~ 60496429 (+) True G630515
TU719313 other downstream 31042 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 122041 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 137446 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 231547 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 820924 62929398 ~ 62929699 (+) True G633613

Expression Profile


TU719295 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
End of interactive chart.

TU719295 Expression in each Bioproject

Bar chart with 13 bars.
TU719295 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.