RNA id: TU719313



Basic Information


Item Value
RNA id TU719313
length 476
RNA type TUCP
GC content 0.49
exon number 1
gene id G632776
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62139516 ~ 62139991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttgttactctaacttccgcgacgcatataaggccctgccccgcccccctttcggaaaagctgaccacgactccattttgttgatccctgcctacagacagaaactaaaacaagaggctcccacgctgaggtctgtccaacgctggtccgaccaagctgactccacactccaagactgcttccatcacgtggactgggagatgtttcgtattgcgtcagataacaacattgacgaatacgctgattcggtgtgtgagttcattagaacttgcgttgaagatgtcgttcccatagcaacgattaaaacattccctaaccagaaaccgtggattgatggcagcattcgtgtgaaactgaaagcgcgaaccactgcttttaatcagggcaaggtgtctggtaacatgaccgaatacaaacagtgcagctattccctccgcaaggctatcaaacaagctaagcgccagtacagagacaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719295 lncRNA upstream 31042 62107342 ~ 62108474 (+) True G632758
TU719288 lncRNA upstream 40255 62095087 ~ 62099261 (+) False G632752
TU719287 lncRNA upstream 40798 62095757 ~ 62098718 (+) True G632752
TU719257 lncRNA upstream 84284 62053802 ~ 62055232 (+) True G632724
TU719238 lncRNA upstream 86115 62051961 ~ 62053401 (+) True G632706
TU719340 lncRNA downstream 37549 62177540 ~ 62177761 (+) True G632796
TU719323 lncRNA downstream 78504 62218495 ~ 62218746 (+) False G632780
TU719324 lncRNA downstream 78504 62218495 ~ 62218697 (+) True G632780
TU719316 lncRNA downstream 83754 62223745 ~ 62228008 (+) False LOC110528171
TU719317 lncRNA downstream 83754 62223745 ~ 62228008 (+) False LOC110528171
XM_021609995.2 mRNA upstream 3931 62024859 ~ 62135585 (+) True LOC110528168
XM_021609994.2 mRNA upstream 126181 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 143218 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 432190 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 599797 61533947 ~ 61539719 (+) True LOC110528162
XM_036983712.1 mRNA downstream 54664 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 54664 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 54670 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 65180 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 91730 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 447869 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 692769 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 888260 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 902467 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1643087 60492277 ~ 60496429 (+) True G630515
TU719353 other downstream 90524 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 105929 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 200030 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 789407 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1480362 63620353 ~ 63621531 (+) True LOC110528206

Expression Profile