RNA id: TU719494


Basic Information

Item Value
RNA id TU719494
length 1015
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G632936
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62140952 ~ 62166943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGAAACGACAGGTCGCAGTACATTTCAATGACCTGAATCatgatatttctaactttttttttttagatttgtgGCATAGAAAGTTAAGATTTCAGACTGGGGAGGTGATATCAATAATACTCTGAGTAGAAGGGAATGTTTggggattttcaccctccagacattatttcctaaaggaCTGAATGATGAAATGCCTTTGTATGgtatgttgtgaatttgaacatgaattAACTGCCTATTTAAGATTTCTGTTTTTCGTATGATGTACCCAATGACTAATGTaaagttccgacaatgcagtaataaccaacaagtaatctaacctaacaattccacaactactaccttatacacacaagtgtaaagggatgaagaataacTACATAgttatatgaatgagtgatggtacagaacggcatagacaagatgcagtagatggtatagagtacagtatatacatatgagatgagtaatgtagggtatgtaaacattaagtggcattgtttaaagtggctagtgatacattttttacatgtatggcacagccactcaatgtttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcagggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggcggtgcagttgccataccaggcggtgatacagcccgccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagtggaccaattcagtttgtctgtggtgtgtatgccgaggaacttaaaacttgctaccctctccactactgttccatcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactccgagggccctcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719491 lncRNA downstream 3094 62137519 ~ 62137858 (-) True G632933
TU719208 lncRNA downstream 125227 62015342 ~ 62015725 (-) True G632683
TU719161 lncRNA downstream 161872 61977726 ~ 61979080 (-) True G632638
TU719066 lncRNA downstream 293275 61846602 ~ 61847677 (-) True G632544
TU719003 lncRNA downstream 337185 61800678 ~ 61803767 (-) True LOC110528991
TU719518 lncRNA upstream 9978 62176921 ~ 62177177 (-) True G632960
TU719519 lncRNA upstream 11325 62178268 ~ 62178574 (-) True G632961
TU719521 lncRNA upstream 15157 62182100 ~ 62182299 (-) True G632963
TU719557 lncRNA upstream 50838 62217781 ~ 62218003 (-) True G632991
TU719558 lncRNA upstream 51552 62218495 ~ 62218734 (-) False G632992
XM_036983709.1 mRNA downstream 219813 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA downstream 219813 61800678 ~ 61921139 (-) False LOC110528991
XM_036983708.1 mRNA downstream 390971 61634197 ~ 61749981 (-) False LOC110528165
XR_002474207.2 mRNA upstream 9038 62175981 ~ 62185946 (-) True LOC110528170
XM_021608282.2 mRNA upstream 178139 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 182159 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 339296 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 339425 62506368 ~ 62520518 (-) False LOC118965309
TU718974 other downstream 449308 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 941514 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 949907 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1392853 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 2057095 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 54329 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 54329 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 341276 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 839832 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1618829 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile