RNA id: TU719559



Basic Information


Item Value
RNA id TU719559
length 211
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G632992
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62218495 ~ 62219506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCGGGGTCTGGAAGTAAGGGGCAGGCGATGGGTTCCAGGTGGGTGGCACCAGGGGGTAGAGTGGGTACTGCTGCTGGGGGCTGAACACCTGCTGCATGTAGAGGTGTGTTGAGTTATACTGGGACTGGCCCTGCTGGCTGTACACACTGGAGTTCGGTACACTACGGTAGCCATTCTTCGCAAAGAATGTGTTGATGGCCTTGATACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719558 lncRNA downstream 125 62218495 ~ 62218734 (-) False G632992
TU719557 lncRNA downstream 856 62217781 ~ 62218003 (-) True G632991
TU719521 lncRNA downstream 36560 62182100 ~ 62182299 (-) True G632963
TU719519 lncRNA downstream 40285 62178268 ~ 62178574 (-) True G632961
TU719518 lncRNA downstream 41682 62176921 ~ 62177177 (-) True G632960
TU719563 lncRNA upstream 1232 62220301 ~ 62221099 (-) True G632993
TU719564 lncRNA upstream 2380 62221449 ~ 62221678 (-) False G632994
TU719569 lncRNA upstream 2380 62221449 ~ 62222050 (-) False G632994
TU719570 lncRNA upstream 2380 62221449 ~ 62222445 (-) False G632994
TU719565 lncRNA upstream 2727 62221796 ~ 62222050 (-) False G632994
XR_002474207.2 mRNA downstream 32913 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 43368 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 43371 62159975 ~ 62175488 (-) False LOC110528169
XM_036983711.1 mRNA downstream 44404 62159975 ~ 62174455 (-) False LOC110528169
XM_036983710.1 mRNA downstream 297720 61800678 ~ 61921139 (-) False LOC110528991
XM_021608282.2 mRNA upstream 126013 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 130033 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 287170 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 287299 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 319264 62538333 ~ 62589746 (-) False slc4a8
TU718974 other downstream 527215 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1019421 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1027814 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1470760 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 2135002 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 2203 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 2203 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 289150 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 787706 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1566703 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile